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Daniel-Liu-c0deb0t committed Aug 5, 2023
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2 changes: 1 addition & 1 deletion Cargo.toml
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[package]
name = "block-aligner"
version = "0.4.0"
version = "0.5.0"
authors = ["c0deb0t <daniel.liu02@gmail.com>"]
edition = "2018"
license = "MIT"
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9 changes: 5 additions & 4 deletions README.md
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SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or
sequence-to-profile alignments using an adaptive block-based algorithm.

Preprint paper available [here](https://www.biorxiv.org/content/10.1101/2021.11.08.467651).
See the Bioinformatics paper [here](https://doi.org/10.1093/bioinformatics/btad487) for more info on the
algorithm and how it compares with other algorithms.

<p align = "center">
<img src = "vis/block_img1.png" width = "300px">
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To use this as a crate in your Rust project, add the following to your `Cargo.toml`:
```
[dependencies]
block-aligner = { version = "0.4", features = ["simd_avx2"] }
block-aligner = { version = "0.5", features = ["simd_avx2"] }
```
Use the `simd_sse2`, `simd_neon`, or `simd_wasm` feature flag for x86 SSE2, ARM Neon, or WASM SIMD support, respectively.
It is your responsibility to ensure the correct feature to be enabled and supported by the
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Here's a simple example:
```
[target.'cfg(target_arch = "x86_64")'.dependencies]
block-aligner = { version = "0.4", features = ["simd_avx2"] }
block-aligner = { version = "0.5", features = ["simd_avx2"] }
[target.'cfg(target_arch = "aarch64")'.dependencies]
block-aligner = { version = "0.4", features = ["simd_neon"] }
block-aligner = { version = "0.5", features = ["simd_neon"] }
```

For developing, testing, or using the C API, you should clone this repo
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2 changes: 1 addition & 1 deletion c/Cargo.toml
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[package]
name = "block-aligner-c"
version = "0.4.0"
version = "0.5.0"
authors = ["c0deb0t <daniel.liu02@gmail.com>"]
edition = "2018"

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