update new test

DanielCorralesAlonso · Nov 21, 2024 · b006a90 · b006a90
1 parent e8e30e5
commit b006a90
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Showing 26 changed files with 47 additions and 43 deletions.
diff --git a/config.yaml b/config.yaml
@@ -27,7 +27,7 @@ calculate_info_values: True
 
 
 # -- Flag for assigning a new test
-new_test: False 
+new_test: True 
 
 # --------- If new_test = True, the following parameters must be defined
 cost_new_test: 3

diff --git a/main.py b/main.py
@@ -70,7 +70,7 @@
 # Parse the arguments
 args = parser.parse_args()
 
-def main(args):
+def main(args = args):
 
     # Normal update.
     if not args.sens_analysis_metrics:

diff --git a/...lse_newtestTrue/decision_models/DM_screening_rel_point_cond_mut_info_linear_new_test.xdsl b/...lse_newtestTrue/decision_models/DM_screening_rel_point_cond_mut_info_linear_new_test.xdsl
diff --git a/outputs/linear_rel_point_cond_mut_info_elicitFalse_newtestTrue/output_data/INFO_node.csv b/outputs/linear_rel_point_cond_mut_info_elicitFalse_newtestTrue/output_data/INFO_node.csv
diff --git a/...uts/linear_rel_point_cond_mut_info_elicitFalse_newtestTrue/output_data/Screening_util.csv b/...uts/linear_rel_point_cond_mut_info_elicitFalse_newtestTrue/output_data/Screening_util.csv
@@ -0,0 +1,2 @@
+,No_screening,gFOBT,FIT,Blood_based,Stool_DNA,CTC,Colon_capsule,New_test
+Screening,0.14198387764624953,0.12488109796553877,0.1409449350928098,0.11821207494877659,0.138242090566967,0.1310851312801571,0.10852196094502659,0.1772877198818878
diff --git a/...r_rel_point_cond_mut_info_elicitFalse_newtestTrue/output_data/Screening_util_new_test.csv b/...r_rel_point_cond_mut_info_elicitFalse_newtestTrue/output_data/Screening_util_new_test.csv
@@ -0,0 +1,2 @@
+,No_screening,gFOBT,FIT,Blood_based,Stool_DNA,CTC,Colon_capsule,New_test
+Screening,0.14198387764624953,0.12488109796553877,0.1409449350928098,0.11821207494877659,0.138242090566967,0.1310851312801571,0.10852196094502659,0.1772877198818878
diff --git a/outputs/linear_rel_point_cond_mut_info_elicitFalse_newtestTrue/output_data/U_values.csv b/outputs/linear_rel_point_cond_mut_info_elicitFalse_newtestTrue/output_data/U_values.csv
@@ -1,4 +1,4 @@
 ,No_screening,No_screening,No_screening,No_screening,No_screening,No_screening,gFOBT,gFOBT,gFOBT,gFOBT,gFOBT,gFOBT,FIT,FIT,FIT,FIT,FIT,FIT,Blood_based,Blood_based,Blood_based,Blood_based,Blood_based,Blood_based,Stool_DNA,Stool_DNA,Stool_DNA,Stool_DNA,Stool_DNA,Stool_DNA,CTC,CTC,CTC,CTC,CTC,CTC,Colon_capsule,Colon_capsule,Colon_capsule,Colon_capsule,Colon_capsule,Colon_capsule,New_test,New_test,New_test,New_test,New_test,New_test
 ,No_pred_screening,No_pred_screening,Predicted_False,Predicted_False,Predicted_True,Predicted_True,No_pred_screening,No_pred_screening,Predicted_False,Predicted_False,Predicted_True,Predicted_True,No_pred_screening,No_pred_screening,Predicted_False,Predicted_False,Predicted_True,Predicted_True,No_pred_screening,No_pred_screening,Predicted_False,Predicted_False,Predicted_True,Predicted_True,No_pred_screening,No_pred_screening,Predicted_False,Predicted_False,Predicted_True,Predicted_True,No_pred_screening,No_pred_screening,Predicted_False,Predicted_False,Predicted_True,Predicted_True,No_pred_screening,No_pred_screening,Predicted_False,Predicted_False,Predicted_True,Predicted_True,No_pred_screening,No_pred_screening,Predicted_False,Predicted_False,Predicted_True,Predicted_True
 ,No_Colonoscopy,Colonoscopy,No_Colonoscopy,Colonoscopy,No_Colonoscopy,Colonoscopy,No_Colonoscopy,Colonoscopy,No_Colonoscopy,Colonoscopy,No_Colonoscopy,Colonoscopy,No_Colonoscopy,Colonoscopy,No_Colonoscopy,Colonoscopy,No_Colonoscopy,Colonoscopy,No_Colonoscopy,Colonoscopy,No_Colonoscopy,Colonoscopy,No_Colonoscopy,Colonoscopy,No_Colonoscopy,Colonoscopy,No_Colonoscopy,Colonoscopy,No_Colonoscopy,Colonoscopy,No_Colonoscopy,Colonoscopy,No_Colonoscopy,Colonoscopy,No_Colonoscopy,Colonoscopy,No_Colonoscopy,Colonoscopy,No_Colonoscopy,Colonoscopy,No_Colonoscopy,Colonoscopy,No_Colonoscopy,Colonoscopy,No_Colonoscopy,Colonoscopy,No_Colonoscopy,Colonoscopy
-U,0.1525991633526288,0.1205216314232781,4.450147717014403e-308,4.450147717014403e-308,4.450147717014403e-308,4.450147717014403e-308,4.450147717014403e-308,4.450147717014403e-308,0.11478081138230811,0.0873335977152464,0.7792799580095124,0.9291795060664934,4.450147717014403e-308,4.450147717014403e-308,0.12033772674486198,0.0674033136182084,0.812301070743836,0.9452162417895487,4.450147717014403e-308,4.450147717014403e-308,0.08155934103266016,0.07269997180757437,0.2937618544124362,0.5683663179068538,4.450147717014403e-308,4.450147717014403e-308,0.08407637169974425,0.05555336755013396,0.26472274970063814,0.543148539657418,4.450147717014403e-308,4.450147717014403e-308,0.08687050187755907,0.06414204054567296,0.22741556597995705,0.5653187864721662,4.450147717014403e-308,4.450147717014403e-308,0.06153106646466555,0.05433447233913835,0.32851762826400643,0.7237186129972246,4.450147717014403e-308,4.450147717014403e-308,0.14624776856652633,0.062257862120803864,0.6094102063488732,0.8235512409099487
+U,0.14198387764624953,0.11199074436991752,4.450147717014403e-308,4.450147717014403e-308,4.450147717014403e-308,4.450147717014403e-308,4.450147717014403e-308,4.450147717014403e-308,0.10687864993861929,0.08104442329772199,0.7768855087997335,0.9118145540844272,4.450147717014403e-308,4.450147717014403e-308,0.11266292803475997,0.0625005923591675,0.8102733884325755,0.9298086852303774,4.450147717014403e-308,4.450147717014403e-308,0.07624855252165785,0.06742589608018323,0.28940646422575333,0.5400046423357336,4.450147717014403e-308,4.450147717014403e-308,0.07956818953393163,0.05148894982953156,0.2608693726014135,0.5152450118062595,4.450147717014403e-308,4.450147717014403e-308,0.08061320442819087,0.05946900297785407,0.21227193879847728,0.5370069979598636,4.450147717014403e-308,4.450147717014403e-308,0.057042478281752906,0.0503568642233827,0.30806821885183877,0.6951611018459789,4.450147717014403e-308,4.450147717014403e-308,0.13718760174399003,0.05771787992114541,0.6048045706559539,0.798100362640401
diff --git a/.../linear_rel_point_cond_mut_info_elicitFalse_newtestTrue/output_data/U_values_new_test.csv b/.../linear_rel_point_cond_mut_info_elicitFalse_newtestTrue/output_data/U_values_new_test.csv
@@ -1,4 +1,4 @@
 ,No_screening,No_screening,No_screening,No_screening,No_screening,No_screening,gFOBT,gFOBT,gFOBT,gFOBT,gFOBT,gFOBT,FIT,FIT,FIT,FIT,FIT,FIT,Blood_based,Blood_based,Blood_based,Blood_based,Blood_based,Blood_based,Stool_DNA,Stool_DNA,Stool_DNA,Stool_DNA,Stool_DNA,Stool_DNA,CTC,CTC,CTC,CTC,CTC,CTC,Colon_capsule,Colon_capsule,Colon_capsule,Colon_capsule,Colon_capsule,Colon_capsule,New_test,New_test,New_test,New_test,New_test,New_test
 ,No_pred_screening,No_pred_screening,Predicted_False,Predicted_False,Predicted_True,Predicted_True,No_pred_screening,No_pred_screening,Predicted_False,Predicted_False,Predicted_True,Predicted_True,No_pred_screening,No_pred_screening,Predicted_False,Predicted_False,Predicted_True,Predicted_True,No_pred_screening,No_pred_screening,Predicted_False,Predicted_False,Predicted_True,Predicted_True,No_pred_screening,No_pred_screening,Predicted_False,Predicted_False,Predicted_True,Predicted_True,No_pred_screening,No_pred_screening,Predicted_False,Predicted_False,Predicted_True,Predicted_True,No_pred_screening,No_pred_screening,Predicted_False,Predicted_False,Predicted_True,Predicted_True,No_pred_screening,No_pred_screening,Predicted_False,Predicted_False,Predicted_True,Predicted_True
 ,No_Colonoscopy,Colonoscopy,No_Colonoscopy,Colonoscopy,No_Colonoscopy,Colonoscopy,No_Colonoscopy,Colonoscopy,No_Colonoscopy,Colonoscopy,No_Colonoscopy,Colonoscopy,No_Colonoscopy,Colonoscopy,No_Colonoscopy,Colonoscopy,No_Colonoscopy,Colonoscopy,No_Colonoscopy,Colonoscopy,No_Colonoscopy,Colonoscopy,No_Colonoscopy,Colonoscopy,No_Colonoscopy,Colonoscopy,No_Colonoscopy,Colonoscopy,No_Colonoscopy,Colonoscopy,No_Colonoscopy,Colonoscopy,No_Colonoscopy,Colonoscopy,No_Colonoscopy,Colonoscopy,No_Colonoscopy,Colonoscopy,No_Colonoscopy,Colonoscopy,No_Colonoscopy,Colonoscopy,No_Colonoscopy,Colonoscopy,No_Colonoscopy,Colonoscopy,No_Colonoscopy,Colonoscopy
-U,0.1525991633526288,0.1205216314232781,4.450147717014403e-308,4.450147717014403e-308,4.450147717014403e-308,4.450147717014403e-308,4.450147717014403e-308,4.450147717014403e-308,0.11478081138230811,0.0873335977152464,0.7792799580095124,0.9291795060664934,4.450147717014403e-308,4.450147717014403e-308,0.12033772674486198,0.0674033136182084,0.812301070743836,0.9452162417895487,4.450147717014403e-308,4.450147717014403e-308,0.08155934103266016,0.07269997180757437,0.2937618544124362,0.5683663179068538,4.450147717014403e-308,4.450147717014403e-308,0.08407637169974425,0.05555336755013396,0.26472274970063814,0.543148539657418,4.450147717014403e-308,4.450147717014403e-308,0.08687050187755907,0.06414204054567296,0.22741556597995705,0.5653187864721662,4.450147717014403e-308,4.450147717014403e-308,0.06153106646466555,0.05433447233913835,0.32851762826400643,0.7237186129972246,4.450147717014403e-308,4.450147717014403e-308,0.14624776856652633,0.062257862120803864,0.6094102063488732,0.8235512409099487
+U,0.14198387764624953,0.11199074436991752,4.450147717014403e-308,4.450147717014403e-308,4.450147717014403e-308,4.450147717014403e-308,4.450147717014403e-308,4.450147717014403e-308,0.10687864993861929,0.08104442329772199,0.7768855087997335,0.9118145540844272,4.450147717014403e-308,4.450147717014403e-308,0.11266292803475997,0.0625005923591675,0.8102733884325755,0.9298086852303774,4.450147717014403e-308,4.450147717014403e-308,0.07624855252165785,0.06742589608018323,0.28940646422575333,0.5400046423357336,4.450147717014403e-308,4.450147717014403e-308,0.07956818953393163,0.05148894982953156,0.2608693726014135,0.5152450118062595,4.450147717014403e-308,4.450147717014403e-308,0.08061320442819087,0.05946900297785407,0.21227193879847728,0.5370069979598636,4.450147717014403e-308,4.450147717014403e-308,0.057042478281752906,0.0503568642233827,0.30806821885183877,0.6951611018459789,4.450147717014403e-308,4.450147717014403e-308,0.13718760174399003,0.05771787992114541,0.6048045706559539,0.798100362640401
diff --git a/outputs/linear_rel_point_cond_mut_info_elicitFalse_newtestTrue/output_data/cond_mut_info.csv b/outputs/linear_rel_point_cond_mut_info_elicitFalse_newtestTrue/output_data/cond_mut_info.csv
diff --git a/...ar_rel_point_cond_mut_info_elicitFalse_newtestTrue/output_data/cond_mut_info_new_test.csv b/...ar_rel_point_cond_mut_info_elicitFalse_newtestTrue/output_data/cond_mut_info_new_test.csv
diff --git a/.../linear_rel_point_cond_mut_info_elicitFalse_newtestTrue/output_data/rel_cond_mut_info.csv b/.../linear_rel_point_cond_mut_info_elicitFalse_newtestTrue/output_data/rel_cond_mut_info.csv
diff --git a/...el_point_cond_mut_info_elicitFalse_newtestTrue/output_data/rel_cond_mut_info_new_test.csv b/...el_point_cond_mut_info_elicitFalse_newtestTrue/output_data/rel_cond_mut_info_new_test.csv
diff --git a/...r_rel_point_cond_mut_info_elicitFalse_newtestTrue/output_data/rel_point_cond_mut_info.csv b/...r_rel_point_cond_mut_info_elicitFalse_newtestTrue/output_data/rel_point_cond_mut_info.csv
diff --git a/...nt_cond_mut_info_elicitFalse_newtestTrue/output_data/rel_point_cond_mut_info_new_test.csv b/...nt_cond_mut_info_elicitFalse_newtestTrue/output_data/rel_point_cond_mut_info_new_test.csv
diff --git a/...el_point_cond_mut_info_elicitFalse_newtestTrue/output_images/cond_mut_info_.png b/...el_point_cond_mut_info_elicitFalse_newtestTrue/output_images/cond_mut_info_.png
diff --git a/...cond_mut_info_elicitFalse_newtestTrue/output_images/cond_mut_info__leftzoom.png b/...cond_mut_info_elicitFalse_newtestTrue/output_images/cond_mut_info__leftzoom.png
diff --git a/...ond_mut_info_elicitFalse_newtestTrue/output_images/cond_mut_info__rightzoom.png b/...ond_mut_info_elicitFalse_newtestTrue/output_images/cond_mut_info__rightzoom.png
diff --git a/..._cond_mut_info_elicitFalse_newtestTrue/output_images/cond_mut_info_new_test.png b/..._cond_mut_info_elicitFalse_newtestTrue/output_images/cond_mut_info_new_test.png
diff --git a/..._info_elicitFalse_newtestTrue/output_images/cond_mut_info_new_test_leftzoom.png b/..._info_elicitFalse_newtestTrue/output_images/cond_mut_info_new_test_leftzoom.png
diff --git a/...info_elicitFalse_newtestTrue/output_images/cond_mut_info_new_test_rightzoom.png b/...info_elicitFalse_newtestTrue/output_images/cond_mut_info_new_test_rightzoom.png
diff --git a/...oint_cond_mut_info_elicitFalse_newtestTrue/output_images/rel_cond_mut_info_.png b/...oint_cond_mut_info_elicitFalse_newtestTrue/output_images/rel_cond_mut_info_.png
diff --git a/...d_mut_info_elicitFalse_newtestTrue/output_images/rel_cond_mut_info_new_test.png b/...d_mut_info_elicitFalse_newtestTrue/output_images/rel_cond_mut_info_new_test.png
diff --git a/...cond_mut_info_elicitFalse_newtestTrue/output_images/rel_cond_mut_info_zoom_.png b/...cond_mut_info_elicitFalse_newtestTrue/output_images/rel_cond_mut_info_zoom_.png
diff --git a/...nd_mut_info_elicitFalse_newtestTrue/output_images/rel_cond_mut_info_zoom_2_.png b/...nd_mut_info_elicitFalse_newtestTrue/output_images/rel_cond_mut_info_zoom_2_.png
diff --git a/...nfo_elicitFalse_newtestTrue/output_images/rel_cond_mut_info_zoom_2_new_test.png b/...nfo_elicitFalse_newtestTrue/output_images/rel_cond_mut_info_zoom_2_new_test.png
diff --git a/..._info_elicitFalse_newtestTrue/output_images/rel_cond_mut_info_zoom_new_test.png b/..._info_elicitFalse_newtestTrue/output_images/rel_cond_mut_info_zoom_new_test.png
Original file line number	Diff line number	Diff line change
		@@ -0,0 +1,2 @@
		,No_screening,gFOBT,FIT,Blood_based,Stool_DNA,CTC,Colon_capsule,New_test
		Screening,0.14198387764624953,0.12488109796553877,0.1409449350928098,0.11821207494877659,0.138242090566967,0.1310851312801571,0.10852196094502659,0.1772877198818878