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fix README
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louperelo committed Oct 6, 2022
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Expand Up @@ -27,7 +27,7 @@ Alignment to the reference database is done using [diamond blastp v.2.0.15](http
## Installation
======================

To install AMPcombi:
To install AMPcombi:

Add dependencies of the tool; python > 3.0, biopython, pandas and diamond.
Installation can be done using:
Expand All @@ -47,33 +47,7 @@ conda env create -f ampcombi/environment.yml
or
```
conda install AMPcombi
```

and the latest release can be installed directly from pip, conda, docker, this repository, or from the galaxy toolshed:

pip install hAMRonization
PyPI version PyPI downloads

Or

conda create --name hamronization --channel conda-forge --channel bioconda --channel defaults hamronization
version-on-conda conda-download last-update-on-conda

Or to install using docker:

docker pull finlaymaguire/hamronization:latest
Or to install the latest development version:

git clone https://github.com/pha4ge/hAMRonization
pip install hAMRonization
### For pip installation





### Create conda environment

```

======================
## Usage:
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