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Das Lab

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  1. arnie arnie Public

    Python utility to estimate, compare, and reweight RNA energetics across many secondary structure algorithms.

    Python 98 31

  2. KaggleOpenVaccine KaggleOpenVaccine Public archive

    Jupyter Notebook 54 7

  3. draw_rna draw_rna Public

    Draw RNA secondary structures in python.

    Jupyter Notebook 43 14

  4. RiboGraphViz RiboGraphViz Public

    Visualize global properties of large RNAs using GraphViz force-directed layout.

    Jupyter Notebook 20 8

  5. openvaccine-CE-analysis openvaccine-CE-analysis Public archive

    Data and analysis of capillary electrophoresis data measuring mRNA degradation rates for Combinatorial Optimization of mRNA paper, Das and Barna labs (2020).

    Jupyter Notebook 10 2

  6. FARFAR2-SARS-CoV-2 FARFAR2-SARS-CoV-2 Public archive

    Models of SARS-CoV-2 genomic elements generated by FARFAR2

    8 1

Repositories

Showing 10 of 41 repositories
  • ubr Public

    Ultraplex-Bowtie2-RNAframework pipeline for analysis of SHAPE-MaP/DMS-MaP big library runs

    DasLab/ubr’s past year of commit activity
    MATLAB 3 MIT 0 0 0 Updated Nov 17, 2024
  • arnie Public

    Python utility to estimate, compare, and reweight RNA energetics across many secondary structure algorithms.

    DasLab/arnie’s past year of commit activity
    Python 98 MIT 31 8 0 Updated Nov 11, 2024
  • daslab_tools Public

    Tools, mainly for cluster usage, for Das lab at Stanford

    DasLab/daslab_tools’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 8, 2024
  • KaggleOpenVaccine Public archive
    DasLab/KaggleOpenVaccine’s past year of commit activity
    Jupyter Notebook 54 MIT 7 0 0 Updated Sep 11, 2024
  • draw_rna Public

    Draw RNA secondary structures in python.

    DasLab/draw_rna’s past year of commit activity
    Jupyter Notebook 43 MIT 14 6 2 Updated Sep 3, 2024
  • CASP15_RNA_EM Public
    DasLab/CASP15_RNA_EM’s past year of commit activity
    Jupyter Notebook 3 MIT 0 2 0 Updated Aug 16, 2024
  • Server_RMDB Public

    RNA Mapping Database

    DasLab/Server_RMDB’s past year of commit activity
    JavaScript 4 5 44 0 Updated Aug 5, 2024
  • KaggleRibonanza Public
    DasLab/KaggleRibonanza’s past year of commit activity
    Python 0 0 0 0 Updated Jun 15, 2024
  • Coronavirus_SL5_3D Public

    Accompanying the publication: Tertiary folds of the SL5 RNA from the 5’ proximal region of SARS-CoV-2 and related coronaviruses

    DasLab/Coronavirus_SL5_3D’s past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated May 13, 2024
  • big_library_design Public
    DasLab/big_library_design’s past year of commit activity
    Python 0 MIT 0 24 (1 issue needs help) 0 Updated Mar 5, 2024
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