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updated underlays for SR2022Q4R6 and SC2022Q4R6 (#474)
* updated underlays for SR2022Q4R6 and SC2022Q4R6 * updated queryProjectId with vpc-perimeter-project ids for test-Registered and test-Controlled tiers. * updated queryProjectId with vpc-perimeter-project ids for test-Registered and test-Controlled tiers. * updated queryProjectId with vpc-perimeter-project ids for test-Registered and test-Controlled tiers. * Updated with PR suggestions * Updated indexing builds, added debug to local-dev/run_server script
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29 changes: 29 additions & 0 deletions
29
service/src/main/resources/config/aou/test/SC2022Q4R6/expanded/SC2022Q4R6.json
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190 changes: 190 additions & 0 deletions
190
service/src/main/resources/config/aou/test/SC2022Q4R6/expanded/entity/t_brand.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,190 @@ | ||
| { | ||
| "name" : "t_brand", | ||
| "idAttribute" : "id", | ||
| "attributes" : [ { | ||
| "type" : "KEY_AND_DISPLAY", | ||
| "name" : "standard_concept", | ||
| "dataType" : "STRING", | ||
| "displayHint" : { | ||
| "type" : "ENUM", | ||
| "enumVals" : [ { | ||
| "enumVal" : { | ||
| "value" : { }, | ||
| "display" : "Source" | ||
| }, | ||
| "count" : 0 | ||
| } ] | ||
| }, | ||
| "displayHintTypes" : [ ] | ||
| }, { | ||
| "type" : "SIMPLE", | ||
| "name" : "name", | ||
| "dataType" : "STRING", | ||
| "displayHintTypes" : [ ] | ||
| }, { | ||
| "type" : "SIMPLE", | ||
| "name" : "concept_code", | ||
| "dataType" : "STRING", | ||
| "displayHintTypes" : [ ] | ||
| }, { | ||
| "type" : "SIMPLE", | ||
| "name" : "id", | ||
| "dataType" : "INT64", | ||
| "displayHintTypes" : [ ] | ||
| } ], | ||
| "sourceDataMapping" : { | ||
| "dataPointer" : "omop_dataset", | ||
| "tablePointer" : { | ||
| "table" : "concept", | ||
| "filter" : { | ||
| "type" : "BOOLEAN_AND_OR", | ||
| "operator" : "AND", | ||
| "subfilters" : [ { | ||
| "type" : "BINARY", | ||
| "field" : { | ||
| "column" : "domain_id", | ||
| "runtimeCalculated" : false | ||
| }, | ||
| "operator" : "EQUALS", | ||
| "value" : { | ||
| "stringVal" : "Drug" | ||
| } | ||
| }, { | ||
| "type" : "BINARY", | ||
| "field" : { | ||
| "column" : "concept_class_id", | ||
| "runtimeCalculated" : false | ||
| }, | ||
| "operator" : "EQUALS", | ||
| "value" : { | ||
| "stringVal" : "Brand Name" | ||
| } | ||
| }, { | ||
| "type" : "BINARY", | ||
| "field" : { | ||
| "column" : "invalid_reason", | ||
| "runtimeCalculated" : false | ||
| }, | ||
| "operator" : "IS", | ||
| "value" : { } | ||
| }, { | ||
| "type" : "BOOLEAN_AND_OR", | ||
| "operator" : "OR", | ||
| "subfilters" : [ { | ||
| "type" : "BINARY", | ||
| "field" : { | ||
| "column" : "vocabulary_id", | ||
| "runtimeCalculated" : false | ||
| }, | ||
| "operator" : "EQUALS", | ||
| "value" : { | ||
| "stringVal" : "RxNorm" | ||
| } | ||
| }, { | ||
| "type" : "BINARY", | ||
| "field" : { | ||
| "column" : "vocabulary_id", | ||
| "runtimeCalculated" : false | ||
| }, | ||
| "operator" : "EQUALS", | ||
| "value" : { | ||
| "stringVal" : "RxNorm Extension" | ||
| } | ||
| } ] | ||
| } ] | ||
| } | ||
| }, | ||
| "attributeMappings" : { | ||
| "standard_concept" : { | ||
| "value" : { | ||
| "column" : "standard_concept", | ||
| "runtimeCalculated" : false | ||
| }, | ||
| "display" : { | ||
| "column" : "standard_concept", | ||
| "sqlFunctionWrapper" : "(CASE WHEN ${fieldSql} IS NULL THEN 'Source' WHEN ${fieldSql} = 'S' THEN 'Standard' ELSE 'Unknown' END)", | ||
| "runtimeCalculated" : false | ||
| } | ||
| }, | ||
| "name" : { | ||
| "value" : { | ||
| "column" : "concept_name", | ||
| "runtimeCalculated" : false | ||
| } | ||
| }, | ||
| "concept_code" : { | ||
| "value" : { | ||
| "column" : "concept_code", | ||
| "runtimeCalculated" : false | ||
| } | ||
| }, | ||
| "id" : { | ||
| "value" : { | ||
| "column" : "concept_id", | ||
| "runtimeCalculated" : false | ||
| } | ||
| } | ||
| }, | ||
| "textSearchMapping" : { | ||
| "searchStringTable" : { | ||
| "tablePointer" : { | ||
| "rawSql" : "SELECT textsearch.id, textsearch.text FROM ( SELECT c.concept_id AS id, c.concept_name AS text FROM `all-of-us-ehr-dev.SC2022Q4R6.concept` c UNION ALL SELECT c.concept_id AS id, CAST(c.concept_id AS STRING) AS text FROM `all-of-us-ehr-dev.SC2022Q4R6.concept` c UNION ALL SELECT c.concept_id AS id, c.concept_code AS text FROM `all-of-us-ehr-dev.SC2022Q4R6.concept` c ) AS textsearch JOIN `all-of-us-ehr-dev.SC2022Q4R6.concept` c ON c.concept_id = textsearch.id WHERE c.domain_id = 'Drug' AND c.concept_class_id = 'Brand Name' AND c.vocabulary_id IN ('RxNorm', 'RxNorm Extension') " | ||
| }, | ||
| "fieldPointers" : { | ||
| "id" : { | ||
| "column" : "id", | ||
| "runtimeCalculated" : false | ||
| }, | ||
| "text" : { | ||
| "column" : "text", | ||
| "runtimeCalculated" : false | ||
| } | ||
| } | ||
| } | ||
| }, | ||
| "hierarchyMappings" : { } | ||
| }, | ||
| "indexDataMapping" : { | ||
| "dataPointer" : "index_dataset", | ||
| "tablePointer" : { | ||
| "table" : "t_brand" | ||
| }, | ||
| "attributeMappings" : { | ||
| "standard_concept" : { | ||
| "value" : { | ||
| "column" : "standard_concept", | ||
| "runtimeCalculated" : false | ||
| }, | ||
| "display" : { | ||
| "column" : "t_display_standard_concept", | ||
| "runtimeCalculated" : false | ||
| } | ||
| }, | ||
| "name" : { | ||
| "value" : { | ||
| "column" : "name", | ||
| "runtimeCalculated" : false | ||
| } | ||
| }, | ||
| "concept_code" : { | ||
| "value" : { | ||
| "column" : "concept_code", | ||
| "runtimeCalculated" : false | ||
| } | ||
| }, | ||
| "id" : { | ||
| "value" : { | ||
| "column" : "id", | ||
| "runtimeCalculated" : false | ||
| } | ||
| } | ||
| }, | ||
| "textSearchMapping" : { | ||
| "searchString" : { | ||
| "column" : "text", | ||
| "runtimeCalculated" : false | ||
| } | ||
| }, | ||
| "hierarchyMappings" : { } | ||
| } | ||
| } |
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