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update the pilotsynthea2022q3 config to reflect newer features #968

Merged
merged 11 commits into from
Sep 18, 2024
Merged

update the pilotsynthea2022q3 config to reflect newer features #968

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a7e553a
start at updating the pilotsynthea2022q3 config
amygdala Aug 27, 2024
e2d1de4
start at updating the pilotsynthea2022q3 config
amygdala Aug 28, 2024
76f25a0
WIP
amygdala Sep 3, 2024
bf97fd7
WIP
amygdala Sep 3, 2024
184c2b0
Merge branch 'main' into amyu/pilotsynthea_update
amygdala Sep 3, 2024
8d7c6f5
Merge branch 'main' into amyu/pilotsynthea_update
amygdala Sep 9, 2024
d45b176
Merge branch 'main' into amyu/pilotsynthea_update
amygdala Sep 9, 2024
5f52b9d
renamed 'measurement' --> 'measurements', added cpt4 selector
amygdala Sep 12, 2024
a1a936a
visitOccurrence fix, point pilotsynthea indexer config to new dataset
amygdala Sep 17, 2024
b9a148a
Merge branch 'main' into amyu/pilotsynthea_update
amygdala Sep 18, 2024
e4625a5
Merge branch 'main' into amyu/pilotsynthea_update
amygdala Sep 18, 2024
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6 changes: 5 additions & 1 deletion ...in/resources/config/datamapping/pilotsynthea2022q3/entity/conditionOccurrence/entity.json
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Expand Up @@ -14,5 +14,9 @@
{ "name": "visit_occurrence_id", "dataType": "INT64" },
{ "name": "visit_type", "dataType": "INT64", "valueFieldName": "visit_concept_id", "displayFieldName": "visit_concept_name", "isComputeDisplayHint": true }
],
"idAttribute": "id"
"idAttribute": "id",
"temporalQuery": {
"visitDateAttribute": "start_date",
"visitIdAttribute": "visit_occurrence_id"
}
}
6 changes: 5 additions & 1 deletion .../main/resources/config/datamapping/pilotsynthea2022q3/entity/deviceOccurrence/entity.json
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Expand Up @@ -13,5 +13,9 @@
{ "name": "visit_occurrence_id", "dataType": "INT64" },
{ "name": "visit_type", "dataType": "INT64", "valueFieldName": "visit_concept_id", "displayFieldName": "visit_concept_name", "isComputeDisplayHint": true }
],
"idAttribute": "id"
"idAttribute": "id",
"temporalQuery": {
"visitDateAttribute": "start_date",
"visitIdAttribute": "visit_occurrence_id"
}
}
6 changes: 5 additions & 1 deletion ...n/resources/config/datamapping/pilotsynthea2022q3/entity/ingredientOccurrence/entity.json
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Expand Up @@ -16,5 +16,9 @@
{ "name": "visit_occurrence_id", "dataType": "INT64" },
{ "name": "visit_type", "dataType": "INT64", "valueFieldName": "visit_concept_id", "displayFieldName": "visit_concept_name", "isComputeDisplayHint": true }
],
"idAttribute": "id"
"idAttribute": "id",
"temporalQuery": {
"visitDateAttribute": "start_date",
"visitIdAttribute": "visit_occurrence_id"
}
}
6 changes: 5 additions & 1 deletion ...in/resources/config/datamapping/pilotsynthea2022q3/entity/procedureOccurrence/entity.json
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Expand Up @@ -12,5 +12,9 @@
{ "name": "visit_occurrence_id", "dataType": "INT64" },
{ "name": "visit_type", "dataType": "INT64", "valueFieldName": "visit_concept_id", "displayFieldName": "visit_concept_name", "isComputeDisplayHint": true }
],
"idAttribute": "id"
"idAttribute": "id",
"temporalQuery": {
"visitDateAttribute": "date",
"visitIdAttribute": "visit_occurrence_id"
}
}
13 changes: 12 additions & 1 deletion underlay/src/main/resources/config/underlay/pilotsynthea2022q3/underlay.json
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Expand Up @@ -59,14 +59,25 @@
"pilotsynthea2022q3/gender",
"pilotsynthea2022q3/race",
"pilotsynthea2022q3/yearOfBirth",
"pilotsynthea2022q3/measurements",
"pilotsynthea2022q3/devices",
"pilotsynthea2022q3/visits",
"pilotsynthea2022q3/cpt4",
"pilotsynthea2022q3/icd9CM",
"pilotsynthea2022q3/icd9Proc",
"pilotsynthea2022q3/icd10CM",
"pilotsynthea2022q3/icd10PCS",
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"pilotsynthea2022q3/outputUnfiltered"
],
"prepackagedDataFeatures": [
"pilotsynthea2022q3/_demographics"
],
"visualizations": [
"omop/gender",
"omop/raceAndAge"
"omop/raceAndAge",
"omop/genderAndAge",
"omop/age",
"omop/race"
],
"metadata": {
"displayName": "Pilot Synthetic Dataset 2022q3",
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