setup.py

from os.path import exists
from setuptools import Extension, setup, find_packages
import numpy as np
from Cython.Build import cythonize
from Cython.Compiler import Options

Options.docstrings = True
Options.embed_pos_in_docstring = True
Options.fast_fail = True

cython_compiler_directives = {
    "language_level": 3,
    "embedsignature": True,
    "binding": True,
    "infer_types": True,
    # "show_all_warnings": True,
    # "nthreads":max(1, cpu_count()//2),
}

cythonize_flags = {
    # "depfile":True,
    # "nthreads": (int)((cpu_count()//2) + 1),
    # "show_all_warnings":True,
}

cython_modules = ["simplex_tree_multi", "rank_invariant", "multiparameter_module_approximation"]
extensions = [Extension(f"multipers.{module}",
		sources=[f"multipers/{module}.pyx"],
		language='c++',
		extra_compile_args=[
			"-Ofast",
			# "-march=native",
			"-std=c++20",
			# "-fno-aligned-new" # Uncomment this if you have trouble compiling on macos.
			'-ltbb',
			"-Wall",
		],
		extra_link_args=['-ltbb'],
		define_macros=[("NPY_NO_DEPRECATED_API", "NPY_1_7_API_VERSION")],
	) for module in cython_modules
]
setup(
    name='multipers',
    author="David Loiseaux",
    author_email="david.loiseaux@inria.fr",
    description="Multiparameter persistence toolkit",
	ext_modules=cythonize(
		extensions, compiler_directives=cython_compiler_directives, **cythonize_flags),
	packages=find_packages(include=['multipers', "multipers.*"]),
	package_data={"multipers":["*.pyi"]},
	python_requires=">=3.10",
	include_dirs = ['multipers', "multipers/gudhi", np.get_include()],
)