Skip to content

Commit

Permalink
Update integration_methods.md
Browse files Browse the repository at this point in the history
  • Loading branch information
giuliaelgarcia authored Mar 5, 2024
1 parent 959ec68 commit 031c824
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion docs/usage/integration_methods.md
Original file line number Diff line number Diff line change
Expand Up @@ -26,5 +26,5 @@ The following table describes the different methods of batch correction availabl
| scVI | unimodal (batch correction) | rna | [scVI](https://github.com/scverse/scvi-tools) | [Gayoso et al 2022](https://www.nature.com/articles/s41587-021-01206-w) | [Luecken et al 2022](https://www.nature.com/articles/s41592-021-01336-8) |
| MultiVI | multimodal | atac, rna | [MultiVI](https://github.com/scverse/scvi-tools) | [Ashuach et al 2023](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10406609/) | [Lee, Kaestner, and Li 2023](https://genomebiology.biomedcentral.com/articles/10.1186/s13059-023-03073-x) |
| totalVI | multimodal | prot, rna | [totalVI](https://github.com/scverse/scvi-tools) | [Gayoso  et al. 2021](https://pubmed.ncbi.nlm.nih.gov/33589839/) | [Makrodimitris et al 2024](https://academic.oup.com/bib/article/25/1/bbad416/7450271) |
| MOFA | multimodal | rna, atac, prot | [MOFA][(https://github.com/bioFAM/mofapy2) | [Argelaguet et al 2020](https://genomebiology.biomedcentral.com/articles/10.1186/s13059-020-02015-1) | [Lee, Kaestner, and Li 2023](https://genomebiology.biomedcentral.com/articles/10.1186/s13059-023-03073-x) |
| MOFA | multimodal | rna, atac, prot | [MOFA](https://github.com/bioFAM/mofapy2) | [Argelaguet et al 2020](https://genomebiology.biomedcentral.com/articles/10.1186/s13059-020-02015-1) | [Lee, Kaestner, and Li 2023](https://genomebiology.biomedcentral.com/articles/10.1186/s13059-023-03073-x) |
| WNN | multimodal | rna, atac, prot | [WNN](https://muon.readthedocs.io/en/latest/api/generated/muon.pp.neighbors.html) | [Hao et al 2021](https://pubmed.ncbi.nlm.nih.gov/34062119/) | [Lee, Kaestner, and Li 2023](https://genomebiology.biomedcentral.com/articles/10.1186/s13059-023-03073-x) |

0 comments on commit 031c824

Please sign in to comment.