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changes to clustering yaml
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giuliaelgarcia committed Mar 5, 2024
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4 changes: 2 additions & 2 deletions docs/yaml_docs/pipeline_clustering_yml.md
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Expand Up @@ -228,7 +228,7 @@ When pseudo_seurat is set to True then a [python implementation](https://github.
- <span class="parameter">layer </span> `String`, Default: logged_counts<br>
Which layer stores counts for differential expression test.
Options include logged_counts, signac_norm , and logTF_norm,logIDF_norm
- <span class="parameter">mincels </span> `Integer`, Default: t-10<br>
- <span class="parameter">mincels </span> `Integer`, Default: 10<br>
If the number of clusters contains less than the number of cells maker analysis is not necessary.
- <span class="parameter">method </span> `String`, Default: wilcoxon<br>
Options include: ‘logreg’, ‘t-test’, ‘wilcoxon’, ‘t-test_overestim_var’
Expand All @@ -240,7 +240,7 @@ When pseudo_seurat is set to True then a [python implementation](https://github.


- <span class="parameter">multimodal:</span><br>
- <span class="parameter">mincels </span> `Integer`, Default: t-10<br>
- <span class="parameter">mincels </span> `Integer`, Default:10<br>
If the number of clusters contains less than the number of cells maker analysis is not necessary.
- <span class="parameter">method </span> `String`, Default: wilcoxon<br>
Options include: ‘logreg’, ‘t-test’, ‘wilcoxon’, ‘t-test_overestim_var’
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