From 1cd393cdd6bce10eab1ef12715feac00aa98c048 Mon Sep 17 00:00:00 2001 From: giuliaelgarcia Date: Tue, 5 Mar 2024 11:42:38 +0000 Subject: [PATCH] changes to clustering yaml --- docs/yaml_docs/pipeline_clustering_yml.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/docs/yaml_docs/pipeline_clustering_yml.md b/docs/yaml_docs/pipeline_clustering_yml.md index 76fd61a5..b34981fb 100644 --- a/docs/yaml_docs/pipeline_clustering_yml.md +++ b/docs/yaml_docs/pipeline_clustering_yml.md @@ -228,7 +228,7 @@ When pseudo_seurat is set to True then a [python implementation](https://github. - layer `String`, Default: logged_counts
Which layer stores counts for differential expression test. Options include logged_counts, signac_norm , and logTF_norm,logIDF_norm - - mincels `Integer`, Default: t-10
+ - mincels `Integer`, Default: 10
If the number of clusters contains less than the number of cells maker analysis is not necessary. - method `String`, Default: wilcoxon
Options include: ‘logreg’, ‘t-test’, ‘wilcoxon’, ‘t-test_overestim_var’ @@ -240,7 +240,7 @@ When pseudo_seurat is set to True then a [python implementation](https://github. - multimodal:
- - mincels `Integer`, Default: t-10
+ - mincels `Integer`, Default:10
If the number of clusters contains less than the number of cells maker analysis is not necessary. - method `String`, Default: wilcoxon
Options include: ‘logreg’, ‘t-test’, ‘wilcoxon’, ‘t-test_overestim_var’