Changing qc sore_genes default pipeline.yml

Changed the RNA QC score_genes default from MarkersNutro to blank in the ingest pipeline.yml
DendrouLab · Mar 12, 2024 · 44be885 · 44be885
1 parent 0a23aba
commit 44be885
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/panpipes/panpipes/pipeline_ingest/pipeline.yml b/panpipes/panpipes/pipeline_ingest/pipeline.yml
@@ -86,7 +86,7 @@ custom_genes_file: resources/qc_genelist_1.0.csv
 
 # (for pipeline_ingest.py)
 calc_proportions: hb,mt,rp
-score_genes: MarkersNeutro
+score_genes: 
 
 # cell cycle action
 ccgenes: default