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Merge pull request #272 from DendrouLab/resolutions_g
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added examples clustering yaml
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deevdevil88 authored Apr 29, 2024
2 parents b7882bb + db0319c commit 732d66b
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20 changes: 18 additions & 2 deletions docs/yaml_docs/pipeline_clustering_yml.md
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Expand Up @@ -166,8 +166,14 @@ Prefix for the sample that comes out of the filtering/ preprocessing steps of th
Can specify a single float or an array: 0.25,0.5,0.8
- <span class="parameter">rna:</span>
- <span class="parameter">mindist </span> `Float`, Default: 0.5<br>
Can specify a single float or an array: 0.25,0.5,0.8

Can specify a single float or an array: 0.25,0.5,0.8<br>

The mindist parameters should be inputted as a list, in the following format:
```
mindist:
- 0.25
- 0.5
```
## Parameters for clustering

- <span class="parameter">clusterspecs:</span>
Expand Down Expand Up @@ -199,6 +205,16 @@ Prefix for the sample that comes out of the filtering/ preprocessing steps of th
- <span class="parameter">algorithm</span> `String`, Default: leiden<br>
Options include louvain or leiden.

The resolutions should be inputted as a list, in the following format:
```
resolutions:
- 0.2
- 0.6
- 1
```



## Parameters for finding marker genes

In this part of the analysis we define parameters to run marker analysis.
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