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xenium adjust figshare links
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SarahOuologuem committed Dec 17, 2024
1 parent 5fa72b0 commit 7e04d41
Showing 1 changed file with 9 additions and 9 deletions.
18 changes: 9 additions & 9 deletions .github/workflows/spatial_ingestion_xenium.yml
Original file line number Diff line number Diff line change
Expand Up @@ -58,17 +58,17 @@ jobs:
run: |
mkdir spatial spatial/ingestion_xenium spatial/ingestion_xenium/data
cd spatial/ingestion_xenium/data
curl -L -o experiment.xenium https://figshare.com/ndownloader/files/51243614
curl -L -o nucleus_boundaries.parquet https://figshare.com/ndownloader/files/51243605
curl -L -o cell_boundaries.parquet https://figshare.com/ndownloader/files/51243596
curl -L -o transcripts.parquet https://figshare.com/ndownloader/files/51243608
curl -L -o cell_feature_matrix.h5 https://figshare.com/ndownloader/files/51243599
curl -L -o cells.parquet https://figshare.com/ndownloader/files/51243620
curl -L -o morphology_mip.ome.tif https://figshare.com/ndownloader/files/51243623
curl -L -o cells.zarr.zip https://figshare.com/ndownloader/files/51244049
curl -L -o experiment.xenium https://figshare.com/ndownloader/files/51244265
curl -L -o nucleus_boundaries.parquet https://figshare.com/ndownloader/files/51244286
curl -L -o cell_boundaries.parquet https://figshare.com/ndownloader/files/51244244
curl -L -o transcripts.parquet https://figshare.com/ndownloader/files/51244283
curl -L -o cell_feature_matrix.h5 https://figshare.com/ndownloader/files/51244247
curl -L -o cells.parquet https://figshare.com/ndownloader/files/51244259
curl -L -o morphology_mip.ome.tif https://figshare.com/ndownloader/files/51244415
curl -L -o cells.zarr.zip https://figshare.com/ndownloader/files/51244262
mkdir morphology_focus
cd morphology_focus
curl -L -o morphology_focus_0000.ome.tif https://figshare.com/ndownloader/files/51243626
curl -L -o morphology_focus_0000.ome.tif https://figshare.com/ndownloader/files/51244277
# Note: we run the following to test that the commands works
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