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bio-la committed Apr 24, 2024
1 parent d488587 commit 8c3eaf8
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion panpipes/panpipes/pipeline_refmap/pipeline.yml
Original file line number Diff line number Diff line change
Expand Up @@ -53,7 +53,7 @@ reference_data: path_to_mudata
totalvi:
- path_to_totalvi1
- path_to_totalvi2
impute_proteins: True
impute_proteins: False
# transform_batch is a batch-covariate specific to totalvi, allows the model to use the batch information in the query to mitigate
# differences in protein sequencing depth
transform_batch:
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