From 8c3eaf847c59dea96b3e32b2ef919643bff146f5 Mon Sep 17 00:00:00 2001 From: bio-la Date: Wed, 24 Apr 2024 11:35:23 +0200 Subject: [PATCH] changes to default --- panpipes/panpipes/pipeline_refmap/pipeline.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/panpipes/panpipes/pipeline_refmap/pipeline.yml b/panpipes/panpipes/pipeline_refmap/pipeline.yml index d82a4206..da5e784e 100644 --- a/panpipes/panpipes/pipeline_refmap/pipeline.yml +++ b/panpipes/panpipes/pipeline_refmap/pipeline.yml @@ -53,7 +53,7 @@ reference_data: path_to_mudata totalvi: - path_to_totalvi1 - path_to_totalvi2 -impute_proteins: True +impute_proteins: False # transform_batch is a batch-covariate specific to totalvi, allows the model to use the batch information in the query to mitigate # differences in protein sequencing depth transform_batch: