From b4120e44ed2da3d3a721fd565d79a55407310908 Mon Sep 17 00:00:00 2001 From: Giulia Garcia <147185635+giuliaelgarcia@users.noreply.github.com> Date: Tue, 23 Apr 2024 10:28:49 +0100 Subject: [PATCH] Update pipeline_refmap_yml.md Fixed indent --- docs/yaml_docs/pipeline_refmap_yml.md | 16 ++++++++-------- 1 file changed, 8 insertions(+), 8 deletions(-) diff --git a/docs/yaml_docs/pipeline_refmap_yml.md b/docs/yaml_docs/pipeline_refmap_yml.md index 7d8cd813..4fa4f3d7 100644 --- a/docs/yaml_docs/pipeline_refmap_yml.md +++ b/docs/yaml_docs/pipeline_refmap_yml.md @@ -30,22 +30,22 @@ You can download the different refmap `pipeline.yml` files here: Computing resources to use, specifically the number of threads used for parallel jobs. Specified by the following three parameters: - threads_high `Integer`, Default: 1
- Number of threads used for high intensity computing tasks. - For each thread, there must be enough memory to load all your input files at once and create the MuData object. +Number of threads used for high intensity computing tasks. +For each thread, there must be enough memory to load all your input files at once and create the MuData object. - threads_medium `Integer`, Default: 1
- Number of threads used for medium intensity computing tasks. - For each thread, there must be enough memory to load your mudata and do computationally light tasks. +Number of threads used for medium intensity computing tasks. +For each thread, there must be enough memory to load your mudata and do computationally light tasks. - threads_low `Integer`, Default: 1
- Number of threads used for low intensity computing tasks. - For each thread, there must be enough memory to load text files and do plotting, requires much less memory than the other two. +Number of threads used for low intensity computing tasks. +For each thread, there must be enough memory to load text files and do plotting, requires much less memory than the other two. - condaenv `String` (Path)
- Path to conda environment that should be used to run panpipes. +Path to conda environment that should be used to run panpipes. - queues: `String` (Path)
- In case a special queue is required for long jobs or if the user has access to a GPU-specific queue. Otherwise, leave it blank. +In case a special queue is required for long jobs or if the user has access to a GPU-specific queue. Otherwise, leave it blank. - long: `String` (Path)
- gpu: `String` (Path)