code fix

DendrouLab · Apr 22, 2024 · db31257 · db31257
1 parent f5771cf
commit db31257
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/panpipes/python_scripts/run_lisi.py b/panpipes/python_scripts/run_lisi.py
@@ -28,9 +28,9 @@
 # load metadata
 L.info("Reading in cell metadata from '%s'" % args.cell_meta_df)
 cell_meta_df = pd.read_csv(args.cell_meta_df, index_col=0)
-L.info("Reading in batch dictionary from '%s" % args.batch_dict)
+L.info("Reading in batch dictionary from '%s" % args.integration_dict)
 batch_dict = read_yaml(args.integration_dict)
-L.info("Reading in UMAP coordinates from '%s'" % args.combined_umaps_tsv)
+L.info("Reading in UMAP coordinates from '%s'" % args.combined_umaps_df)
 umaps = pd.read_csv(args.combined_umaps_df, sep="\t", index_col=0)
 
 for k in batch_dict.keys():