From db312575c0bc49f573bd33ee41dd1027608164c8 Mon Sep 17 00:00:00 2001 From: SarahOuologuem Date: Mon, 22 Apr 2024 11:30:44 +0000 Subject: [PATCH] code fix --- panpipes/python_scripts/run_lisi.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/panpipes/python_scripts/run_lisi.py b/panpipes/python_scripts/run_lisi.py index 7395a49c..2650a3b6 100644 --- a/panpipes/python_scripts/run_lisi.py +++ b/panpipes/python_scripts/run_lisi.py @@ -28,9 +28,9 @@ # load metadata L.info("Reading in cell metadata from '%s'" % args.cell_meta_df) cell_meta_df = pd.read_csv(args.cell_meta_df, index_col=0) -L.info("Reading in batch dictionary from '%s" % args.batch_dict) +L.info("Reading in batch dictionary from '%s" % args.integration_dict) batch_dict = read_yaml(args.integration_dict) -L.info("Reading in UMAP coordinates from '%s'" % args.combined_umaps_tsv) +L.info("Reading in UMAP coordinates from '%s'" % args.combined_umaps_df) umaps = pd.read_csv(args.combined_umaps_df, sep="\t", index_col=0) for k in batch_dict.keys():