diff --git a/panpipes/panpipes/pipeline_ingest.py b/panpipes/panpipes/pipeline_ingest.py index 3cb1fb08..c135ea56 100644 --- a/panpipes/panpipes/pipeline_ingest.py +++ b/panpipes/panpipes/pipeline_ingest.py @@ -152,7 +152,7 @@ def load_mudatas(rna_path, outfile, if bcr_path is not None and pd.notna(bcr_path): cmd += " --bcr_filtered_contigs %(bcr_path)s" cmd += " --bcr_filetype %(bcr_filetype)s" - logfile = f"logs/load_mudatas_{sample_id}.log" + logfile = f"load_mudatas_{sample_id}.log" cmd += f" > logs/{logfile}" # print(cmd) job_kwargs["job_threads"] = PARAMS['resources_threads_medium']