v0.4.0

v0.4.0

Big Change! the submission files for the ingest workflow have now changed! we require the paths to the Gene expression (RNA/GEX) and Protein (ADT) to have the following headers.

sample_id	rna_path	rna_filetype	prot_path	prot_filetype
sampleX	path/to/rna	10X_h5	path/to/prot	10x_h5

See tutorials for examples of submission files.

added

• merged PR #111:
  • LSI in panpipes_preprocess is run on the highly variable features
  • n_comp for LSI

fixed

• changed all instances of ADT into PROT
• changed all instances of GEX to RNA
• changed the params to fix plotting as mentioned in issue #41
• typo in readme
• set default seaborn <=0.12.2 to avoid issue #104, #126

auto-generated releases

What's Changed

• renaming by @bio-la in #110
• Run LSI on HVFs by @SarahOuologuem in #111
• Seaborn by @bio-la in #128
• Fc namescheck by @bio-la in #115

Full Changelog: v0.3.1...v0.4.0