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pyproject.toml
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[build-system]
requires = ["setuptools>=69", "setuptools_scm[toml]>=8", "wheel"]
build-backend = "setuptools.build_meta"
[project]
name = "pato"
classifiers = [
"Development Status :: 5 - Production/Stable",
"License :: OSI Approved :: Apache Software License",
"Programming Language :: Python :: 3.9",
"Programming Language :: Python :: 3.10",
"Programming Language :: Python :: 3.11",
"Programming Language :: Python :: 3.12",
]
description = "PATO's backend"
dependencies = [
"python-multipart~=0.0.9",
"pika~=1.3.2",
"SQLAlchemy~=2.0.34",
"fastapi~=0.115.5",
"uvicorn[standard]~=0.30.1",
"requests~=2.32.3",
"mysqlclient~=2.2.4",
"mysql-connector-python~=8.2.0",
"pydantic~=2.9.2",
"types-requests",
"lims-utils~=0.2.6"
]
dynamic = ["version"]
license.file = "LICENSE"
readme = "README.rst"
requires-python = ">=3.9"
[project.optional-dependencies]
dev = [
"black~=23.12.0",
"mypy",
"pipdeptree",
"pre-commit",
"pytest",
"pytest-cov",
"ruff",
"tox-direct",
"types-mock",
"pytest-asyncio",
# https://github.com/encode/httpx/blob/master/CHANGELOG.md#0270-21st-february-2024
"httpx~=0.26.0",
"setuptools_scm[toml]>=6.2"
]
[project.scripts]
pato = "pato.__main__:main"
[project.urls]
GitHub = "https://github.com/DiamondLightSource/pato-backend"
[[project.authors]] # Further authors may be added by duplicating this section
email = "guilherme.de-freitas@diamond.ac.uk"
name = "Guilherme de Freitas"
[tool.setuptools_scm]
write_to = "src/pato/_version.py"
fallback_version = "1.9.0"
[tool.mypy]
ignore_missing_imports = true # Ignore missing stubs in imported modules
[tool.pytest.ini_options]
# Run pytest with all our checkers, and don't spam us with massive tracebacks on error
addopts = """
--tb=native -vv --doctest-modules --doctest-glob="*.rst"
"""
# https://iscinumpy.gitlab.io/post/bound-version-constraints/#watch-for-warnings
filterwarnings = "error"
[tool.coverage.run]
data_file = "/tmp/pato.coverage"
[tool.coverage.paths]
# Tests are run from installed location, map back to the src directory
source = ["src", "**/site-packages/"]
# tox must currently be configured via an embedded ini string
# See: https://github.com/tox-dev/tox/issues/999
[tool.tox]
legacy_tox_ini = """
[tox]
skipsdist=True
[testenv:{pre-commit,mypy,pytest}]
# Don't create a virtualenv for the command, requires tox-direct plugin
direct = True
passenv = *
allowlist_externals =
pytest
pre-commit
mypy
# sphinx-build
# sphinx-autobuild
commands =
pytest: pytest tests --cov=pato --cov-report term --cov-report xml:cov.xml {posargs}
mypy: mypy src tests {posargs}
pre-commit: pre-commit run --all-files {posargs}
setenv =
SQL_DATABASE_URL=mysql://root:ispyb-root@127.0.0.1/ispyb
CONFIG_PATH=config.json
MQ_USER=guest
MQ_PASS=guest
"""
[tool.ruff]
src = ["src", "tests"]
line-length = 120
lint.select = [
"C4", # flake8-comprehensions - https://beta.ruff.rs/docs/rules/#flake8-comprehensions-c4
"E", # pycodestyle errors - https://beta.ruff.rs/docs/rules/#error-e
"F", # pyflakes rules - https://beta.ruff.rs/docs/rules/#pyflakes-f
"W", # pycodestyle warnings - https://beta.ruff.rs/docs/rules/#warning-w
"I001", # isort
]