run missing pre-commit

xas-standards-api/src/xas_standards_api/app.py

@@ -1,6 +1,6 @@
 import datetime
 import os
-from typing import Annotated, List, Optional, Union
+from typing import Annotated, List, Optional
 
 import requests
 from fastapi import (
@@ -123,7 +123,9 @@ async def get_current_user(
 
 
 @app.get("/api/user")
-async def check( session: Session = Depends(get_session), user_id: str = Depends(get_current_user)):
+async def check(
+    session: Session = Depends(get_session), user_id: str = Depends(get_current_user)
+):
 
     statement = select(Person).where(Person.identifier == user_id)
     person = session.exec(statement).first()
@@ -168,38 +170,42 @@ def read_standards(
 ) -> CursorPage[XASStandardResponse]:
 
     statement = select(XASStandard).where(
-        XASStandard.review_status == ReviewStatus.approved)
+        XASStandard.review_status == ReviewStatus.approved
+    )
 
     if element:
         statement = statement.join(Element, XASStandard.element_z == Element.z).where(
             Element.symbol == element
         )
 
-
     return paginate(
-        session, statement.order_by(XASStandard.id),
+        session,
+        statement.order_by(XASStandard.id),
     )
 
+
 @app.get("/api/admin/standards")
 def read_standards_admin(
     session: Session = Depends(get_session),
     user_id: str = Depends(get_current_user),
 ) -> CursorPage[AdminXASStandardResponse]:
-    
+
     statement = select(Person).where(Person.identifier == user_id)
     person = session.exec(statement).first()
 
     if person is None or not person.admin:
-         raise HTTPException(status_code=401, detail=f"No standard with id={user_id}")
-    
+        raise HTTPException(status_code=401, detail=f"No standard with id={user_id}")
+
     if not person.admin:
         raise HTTPException(status_code=401, detail=f"User {user_id} not admin")
 
-
-    statement = select(XASStandard).where(XASStandard.review_status == ReviewStatus.pending)
+    statement = select(XASStandard).where(
+        XASStandard.review_status == ReviewStatus.pending
+    )
 
     return paginate(session, statement.order_by(XASStandard.id))
 
+
 @app.get("/api/standards/{id}")
 async def read_standard(
     id: int, session: Session = Depends(get_session)
@@ -251,16 +257,18 @@ def add_standard_file(
 
 
 @app.patch("/api/standards")
-def submit_review(review: XASStandardAdminReviewInput,
-                 session: Session = Depends(get_session),
-                 user_id: str = Depends(get_current_user)):
-
+def submit_review(
+    review: XASStandardAdminReviewInput,
+    session: Session = Depends(get_session),
+    user_id: str = Depends(get_current_user),
+):
+
     statement = select(Person).where(Person.identifier == user_id)
     person = session.exec(statement).first()
 
     if person is None or not person.admin:
-         raise HTTPException(status_code=401, detail=f"No standard with id={user_id}")
-    
+        raise HTTPException(status_code=401, detail=f"No standard with id={user_id}")
+
     if not person.admin:
         raise HTTPException(status_code=401, detail=f"User {user_id} not admin")
     return update_review(session, review, person.id)

xas-standards-api/src/xas_standards_api/crud.py

@@ -49,7 +49,6 @@ def get_standard(session, id) -> XASStandard:
         return standard
     else:
         raise HTTPException(status_code=404, detail=f"No standard with id={id}")
-
 
 
 def update_review(session, review, reviewer_id):

xas-standards-api/src/xas_standards_api/schemas.py

@@ -158,7 +158,12 @@ class XASStandard(XASStandardInput, table=True):
     element: Element = Relationship(sa_relationship_kwargs={"lazy": "joined"})
     edge: Edge = Relationship(sa_relationship_kwargs={"lazy": "joined"})
     beamline: Beamline = Relationship(sa_relationship_kwargs={"lazy": "selectin"})
-    submitter: Person = Relationship(sa_relationship_kwargs={"lazy": "selectin", "foreign_keys": "[XASStandard.submitter_id]"})
+    submitter: Person = Relationship(
+        sa_relationship_kwargs={
+            "lazy": "selectin",
+            "foreign_keys": "[XASStandard.submitter_id]",
+        }
+    )
 
 
 class XASStandardResponse(XASStandardInput):
@@ -168,6 +173,7 @@ class XASStandardResponse(XASStandardInput):
     beamline: BeamlineResponse
     submitter_id: int
 
+
 class AdminXASStandardResponse(XASStandardResponse):
     submitter: Person
 
@@ -176,4 +182,4 @@ class XASStandardAdminReviewInput(SQLModel):
     reviewer_comments: Optional[str] = None
     review_status: ReviewStatus
     standard_id: int
-    #get fedid from person table
+    # get fedid from person table