Skip to content

A reimplementation of Hudson's classical ms simulator for modern data sets.

License

Notifications You must be signed in to change notification settings

DomNelson/msprime

 
 

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

Repository files navigation

msprime

Build Status Build status CircleCI codecov Documentation Status PyPI Downloads Conda Downloads

msprime is a Python API and command line interface for simulating the coalescent with recombination based on tskit. Please see the documentation for further information and installation instructions.

If you would like to help make msprime better, please see the developer documentation to get started.

If you are looking for help on a specific issue or would like to ask a question to fellow msprime users, please send an email to the mailing list. By asking questions on the mailing list, you can help to build a searchable knowledge base.

We are currently working towards our 1.0 release, the roadmap of issues are in this github milestone.

If you use msprime in your work, please cite the PLOS Computational Biology paper. See here for full citation details.

About

A reimplementation of Hudson's classical ms simulator for modern data sets.

Resources

License

Stars

Watchers

Forks

Packages

No packages published

Languages

  • C 50.1%
  • Python 49.5%
  • Other 0.4%