updated mirdeep2 scripts to improve performance
please consider the files here as being still in a testing phase/likely outdated by now since the files were made in 2017.
To pull all files from this repository do
git clone https://github.com/Drmirdeep/mirdeep2_patch.git
The release packages of miRDeep2 are availabe at
https://github.com/rajewsky-lab/mirdeep2
A miRDeep2 tutorial can be found here
https://drmirdeep.github.io/mirdeep2_tutorial.html
Please cite
Friedlaender M.R.; Mackowiak S.D.; Li N.; Chen W.; Rajewsky N. miRDeep2 accurately identifies known and hundreds of novel microrna genes in seven animal clades, Nucleic Acids Research, vol. 40, pp. 37–52, Jan 2012
when using miRDeep2 in a publication.