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### Datasets used in the article "Deep learning of contagion dynamics on complex networks"

_Deep learning of contagion dynamics on complex networks_<br>
[Charles Murphy](https://scholar.google.ca/citations?user=xgBmSD8AAAAJ&hl=en&oi=sra),
[Edward Laurence](https://edwardlaurence.me/) and
[Antoine Allard](http://antoineallard.info),<br>
[arXiv](https://arxiv.org/abs/1904.10814)
This repository contains the raw and processed datasets as well as the scripts used to generate the latter.

We show how the Covid-19 dataset is processed from the raw datasets. Two files are needed and are located in the `raw-dataset` directory of the repository:

#### Number of cases
- raw file: `cases-timeseries-20210327.csv`
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- official data from the [Centro Nacional de Epidemiología](https://cnecovid.isciii.es).
- [original file](https://cnecovid.isciii.es/covid19/resources/casos_tecnica_provincia.csv) downloaded on 2021-03-27.


#### Province population sizes
- raw file: `population-data.csv`.
- processed file: `population.data`.
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- official data from the [Instituto Nacional de Estadística](https://www.ine.es).
- [original file](https://www.ine.es/jaxiT3/Datos.htm?t=2917) for the year 2019 downloaded on 2020-08-11.


#### Mobility data
- raw files (unzipped): `VI_J00.csv`, ..., `VI_J12.csv` and `VI_O00.csv`, ..., `VI_O15.csv`
- processed file: `province_mobility.data`
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__Note__: numbers are represented using the Spanish convention where thousands are separated using a comma (ex: 100,000 denotes one hundred thousand)


#### Reference
_Deep learning of contagion dynamics on complex networks_<br>
[Charles Murphy](https://scholar.google.ca/citations?user=xgBmSD8AAAAJ&hl=en&oi=sra),
[Edward Laurence](https://edwardlaurence.me/) and
[Antoine Allard](http://antoineallard.info),<br>
[arXiv](https://arxiv.org/abs/1904.10814)


[ISO 3166-2:ES]: https://es.wikipedia.org/wiki/ISO_3166-2:ES
[INE's naming convention for the autonomous communities]: https://www.ine.es/daco/daco42/codmun/cod_ccaa.htm
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