First release candidate for BioSamples version 5.2.20

EBIBioSamples · Oct 30, 2023 · 3cc280e · 3cc280e
1 parent 2dde98e
commit 3cc280e
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Showing 61 changed files with 202 additions and 202 deletions.
diff --git a/agents/pom.xml b/agents/pom.xml
@@ -9,7 +9,7 @@
 	<parent>
 		<groupId>uk.ac.ebi.biosamples</groupId>
 		<artifactId>biosamples</artifactId>
-		<version>5.2.21-SNAPSHOT</version>
+		<version>5.2.20-RC1</version>
 	</parent>
 
 	<modules>

diff --git a/agents/solr/pom.xml b/agents/solr/pom.xml
@@ -7,30 +7,30 @@
 	<parent>
 		<groupId>uk.ac.ebi.biosamples</groupId>
 		<artifactId>biosamples</artifactId>
-		<version>5.2.21-SNAPSHOT</version>
+		<version>5.2.20-RC1</version>
 		<relativePath>../../</relativePath>
 	</parent>
 
 	<dependencies>
 		<dependency>
 			<groupId>uk.ac.ebi.biosamples</groupId>
 			<artifactId>properties</artifactId>
-			<version>5.2.21-SNAPSHOT</version>
+			<version>5.2.20-RC1</version>
 		</dependency>
 		<dependency>
 			<groupId>uk.ac.ebi.biosamples</groupId>
 			<artifactId>models-solr</artifactId>
-			<version>5.2.21-SNAPSHOT</version>
+			<version>5.2.20-RC1</version>
 		</dependency>
 		<dependency>
 			<groupId>uk.ac.ebi.biosamples</groupId>
 			<artifactId>messaging</artifactId>
-			<version>5.2.21-SNAPSHOT</version>
+			<version>5.2.20-RC1</version>
 		</dependency>
 		<dependency>
 			<groupId>uk.ac.ebi.biosamples</groupId>
 			<artifactId>utils-ols</artifactId>
-			<version>5.2.21-SNAPSHOT</version>
+			<version>5.2.20-RC1</version>
 		</dependency>
 
 		<dependency>

diff --git a/agents/uploadworkers/pom.xml b/agents/uploadworkers/pom.xml
@@ -7,15 +7,15 @@
 	<parent>
 		<groupId>uk.ac.ebi.biosamples</groupId>
 		<artifactId>biosamples</artifactId>
-		<version>5.2.21-SNAPSHOT</version>
+		<version>5.2.20-RC1</version>
 		<relativePath>../../</relativePath>
 	</parent>
 
 	<dependencies>
 		<dependency>
 			<groupId>uk.ac.ebi.biosamples</groupId>
 			<artifactId>biosamples-spring-boot-starter</artifactId>
-			<version>5.2.21-SNAPSHOT</version>
+			<version>5.2.20-RC1</version>
 		</dependency>
 		<dependency>
 			<groupId>org.springframework.boot</groupId>
@@ -33,22 +33,22 @@
 		<dependency>
 			<groupId>uk.ac.ebi.biosamples</groupId>
 			<artifactId>properties</artifactId>
-			<version>5.2.21-SNAPSHOT</version>
+			<version>5.2.20-RC1</version>
 		</dependency>
 		<dependency>
 			<groupId>uk.ac.ebi.biosamples</groupId>
 			<artifactId>utils-webapp</artifactId>
-			<version>5.2.21-SNAPSHOT</version>
+			<version>5.2.20-RC1</version>
 		</dependency>
 		<dependency>
 			<groupId>uk.ac.ebi.biosamples</groupId>
 			<artifactId>messaging</artifactId>
-			<version>5.2.21-SNAPSHOT</version>
+			<version>5.2.20-RC1</version>
 		</dependency>
 		<dependency>
 			<groupId>uk.ac.ebi.biosamples</groupId>
 			<artifactId>models-mongo</artifactId>
-			<version>5.2.21-SNAPSHOT</version>
+			<version>5.2.20-RC1</version>
 		</dependency>
 		<dependency>
 			<groupId>org.apache.commons</groupId>

diff --git a/client/client/pom.xml b/client/client/pom.xml
@@ -21,25 +21,25 @@
 	<parent>
 		<groupId>uk.ac.ebi.biosamples</groupId>
 		<artifactId>biosamples</artifactId>
-		<version>5.2.21-SNAPSHOT</version>
+		<version>5.2.20-RC1</version>
 		<relativePath>../../</relativePath>
 	</parent>
 
 	<dependencies>
 		<dependency>
 			<groupId>uk.ac.ebi.biosamples</groupId>
 			<artifactId>models-core</artifactId>
-			<version>5.2.21-SNAPSHOT</version>
+			<version>5.2.20-RC1</version>
 		</dependency>
 		<dependency>
 			<groupId>uk.ac.ebi.biosamples</groupId>
 			<artifactId>properties</artifactId>
-			<version>5.2.21-SNAPSHOT</version>
+			<version>5.2.20-RC1</version>
 		</dependency>
 		<dependency>
 			<groupId>uk.ac.ebi.biosamples</groupId>
 			<artifactId>utils-thread</artifactId>
-			<version>5.2.21-SNAPSHOT</version>
+			<version>5.2.20-RC1</version>
 		</dependency>
 		<dependency>
 			<groupId>org.springframework.hateoas</groupId>

diff --git a/client/pom.xml b/client/pom.xml
@@ -14,7 +14,7 @@
 	<parent>
 		<groupId>uk.ac.ebi.biosamples</groupId>
 		<artifactId>biosamples</artifactId>
-		<version>5.2.21-SNAPSHOT</version>
+		<version>5.2.20-RC1</version>
 		<relativePath>../</relativePath>
 	</parent>
 

diff --git a/client/starter/pom.xml b/client/starter/pom.xml
@@ -4,7 +4,7 @@
 
 	<groupId>uk.ac.ebi.biosamples</groupId>
 	<artifactId>biosamples-spring-boot-starter</artifactId>
-	<version>5.2.21-SNAPSHOT</version>
+	<version>5.2.20-RC1</version>
 
 	<packaging>jar</packaging>
 
@@ -17,7 +17,7 @@
 		<dependency>
 			<groupId>uk.ac.ebi.biosamples</groupId>
 			<artifactId>client</artifactId>
-			<version>5.2.21-SNAPSHOT</version>
+			<version>5.2.20-RC1</version>
 		</dependency>
 		<dependency>
 			<groupId>org.springframework.boot</groupId>

diff --git a/commons/pom.xml b/commons/pom.xml
@@ -7,7 +7,7 @@
 <parent>
 	<groupId>uk.ac.ebi.biosamples</groupId>
 	<artifactId>biosamples</artifactId>
-	<version>5.2.21-SNAPSHOT</version>
+	<version>5.2.20-RC1</version>
 </parent>
 
 	<properties>
@@ -24,12 +24,12 @@
 	<dependency>
 	<groupId>uk.ac.ebi.biosamples</groupId>
 	<artifactId>models-mongo</artifactId>
-	<version>5.2.21-SNAPSHOT</version>
+	<version>5.2.20-RC1</version>
 	</dependency>
 	<dependency>
 	<groupId>uk.ac.ebi.biosamples</groupId>
 	<artifactId>models-core</artifactId>
-	<version>5.2.21-SNAPSHOT</version>
+	<version>5.2.20-RC1</version>
 	</dependency>
 	<dependency>
 	<groupId>com.fasterxml.jackson.core</groupId>

diff --git a/docker-agents.sh b/docker-agents.sh
@@ -1,5 +1,5 @@
 #!/bin/bash
 set -e
 
-docker-compose run --rm --service-ports biosamples-agents-solr java -jar agents-solr-5.2.21-SNAPSHOT.jar
+docker-compose run --rm --service-ports biosamples-agents-solr java -jar agents-solr-5.2.20-RC1.jar
 echo "Successfully runned agents"
diff --git a/docker-compose.yml b/docker-compose.yml
@@ -18,7 +18,7 @@ services:
     command:
     - java
     - -jar
-    - webapps-core-5.2.21-SNAPSHOT.war
+    - webapps-core-5.2.20-RC1.war
     environment:
     - env=local
     #AAP certificate
@@ -107,7 +107,7 @@ services:
     command:
       - java
       - -jar
-      - webapps-core-v2-5.2.21-SNAPSHOT.jar
+      - webapps-core-v2-5.2.20-RC1.jar
     environment:
       #AAP certificate
       - jwt.certificate=public.explore.der
@@ -187,7 +187,7 @@ services:
     command:
     - java
     - -jar
-    - agents-solr-5.2.21-SNAPSHOT.jar
+    - agents-solr-5.2.20-RC1.jar
     environment:
     - SPRING_RABBITMQ_HOST=rabbitmq
     - SPRING_RABBITMQ_PUBLISHER-CONFIRMS=true
@@ -212,7 +212,7 @@ services:
     command:
       - java
       - -jar
-      - agents-uploadworkers-5.2.21-SNAPSHOT.jar
+      - agents-uploadworkers-5.2.20-RC1.jar
     environment:
       #AAP certificate
       - jwt.certificate=public.explore.der
@@ -241,7 +241,7 @@ services:
     command:
     - java
     - -jar
-    - pipelines-ena-5.2.21-SNAPSHOT.jar
+    - pipelines-ena-5.2.20-RC1.jar
     environment:
     - BIOSAMPLES_CLIENT_URI=http://biosamples-webapps-core:8080/biosamples
     - LOGGING_FILE=/logs/pipelines-ena.log
@@ -256,7 +256,7 @@ services:
     command:
     - java
     - -jar
-    - pipelines-ncbi-5.2.21-SNAPSHOT.jar
+    - pipelines-ncbi-5.2.20-RC1.jar
     environment:
     - BIOSAMPLES_CLIENT_URI=http://biosamples-webapps-core:8080/biosamples
     - LOGGING_FILE=/logs/pipelines-ncbi.log
@@ -271,7 +271,7 @@ services:
     command:
     - java
     - -jar
-    - pipelines-accession-5.2.21-SNAPSHOT.jar
+    - pipelines-accession-5.2.20-RC1.jar
     environment:
     - BIOSAMPLES_CLIENT_URI=http://biosamples-webapps-core:8080/biosamples
     - LOGGING_FILE=/logs/pipelines-accession.log
@@ -286,7 +286,7 @@ services:
     command:
     - java
     - -jar
-    - pipelines-copydown-5.2.21-SNAPSHOT.jar
+    - pipelines-copydown-5.2.20-RC1.jar
     environment:
     - BIOSAMPLES_CLIENT_URI=http://biosamples-webapps-core:8080/biosamples
     - LOGGING_FILE=/logs/pipelines-copydown.log
@@ -301,7 +301,7 @@ services:
     command:
     - java
     - -jar
-    - pipelines-curation-5.2.21-SNAPSHOT.jar
+    - pipelines-curation-5.2.20-RC1.jar
     environment:
     - BIOSAMPLES_CLIENT_URI=http://biosamples-webapps-core:8080/biosamples
     - LOGGING_FILE=/logs/pipelines-curation.log
@@ -318,7 +318,7 @@ services:
     command:
     - java
     - -jar
-    - pipelines-zooma-5.2.21-SNAPSHOT.jar
+    - pipelines-zooma-5.2.20-RC1.jar
     environment:
     - BIOSAMPLES_CLIENT_URI=http://biosamples-webapps-core:8080/biosamples
     - LOGGING_FILE=/logs/pipelines-zooma.log
@@ -335,7 +335,7 @@ services:
     command:
     - java
     - -jar
-    - pipelines-reindex-5.2.21-SNAPSHOT.jar
+    - pipelines-reindex-5.2.20-RC1.jar
     environment:
     - BIOSAMPLES_CLIENT_URI=http://biosamples-webapps-core:8080/biosamples
     - LOGGING_FILE=/logs/pipelines-reindex.log
@@ -353,7 +353,7 @@ services:
     command:
     - java
     - -jar
-    - pipelines-export-5.2.21-SNAPSHOT.jar
+    - pipelines-export-5.2.20-RC1.jar
     - --gzip
     - /export/export.json.gzip
     environment:
@@ -371,7 +371,7 @@ services:
     command:
     - java
     - -jar
-    - integration-5.2.21-SNAPSHOT.jar
+    - integration-5.2.20-RC1.jar
     environment:
     - BIOSAMPLES_CLIENT_URI=http://biosamples-webapps-core:8080/biosamples
     - BIOSAMPLES_CLIENT_URI_V2=http://biosamples-webapps-core-v2:8080/biosamples/v2

diff --git a/docker-integration.big.sh b/docker-integration.big.sh
@@ -11,7 +11,7 @@ ARGS=--spring.profiles.active=big
 for X in 1 2 3 4 5
 do
   #java -jar integration/target/integration-4.0.0-SNAPSHOT.jar --phase=$X $ARGS $@
-  docker-compose run --rm --service-ports biosamples-integration java -jar integration-5.2.21-SNAPSHOT.jar --phase=$X $ARGS $@
+  docker-compose run --rm --service-ports biosamples-integration java -jar integration-5.2.20-RC1.jar --phase=$X $ARGS $@
   sleep 10 #solr is configured to commit every 5 seconds
 
 done

diff --git a/docker-integration.sh b/docker-integration.sh
@@ -14,7 +14,7 @@ do
   echo "=================================== STARTING INTEGRATION TESTS PHASE-"$X "====================================="
   echo "============================================================================================================"
   #java -jar integration/target/integration-4.0.0-SNAPSHOT.jar --phase=$X $ARGS $@
-  docker-compose run --rm --service-ports biosamples-integration java -jar integration-5.2.21-SNAPSHOT.jar --phase=$X $ARGS $@
+  docker-compose run --rm --service-ports biosamples-integration java -jar integration-5.2.20-RC1.jar --phase=$X $ARGS $@
   sleep 10 #solr is configured to commit every 5 seconds
 
 done

diff --git a/docker-test.sh b/docker-test.sh
@@ -5,7 +5,7 @@ docker-compose up -d biosamples-agents-solr
 
 for X in "$@"
 do
-  docker-compose run --rm --service-ports biosamples-integration java -jar integration-5.2.21-SNAPSHOT.jar --phase=$X $ARGS $@
+  docker-compose run --rm --service-ports biosamples-integration java -jar integration-5.2.20-RC1.jar --phase=$X $ARGS $@
   sleep 30 #solr is configured to commit every 5 seconds
 
 done

diff --git a/integration/pom.xml b/integration/pom.xml
@@ -6,25 +6,25 @@
 	<parent>
 		<groupId>uk.ac.ebi.biosamples</groupId>
 		<artifactId>biosamples</artifactId>
-		<version>5.2.21-SNAPSHOT</version>
+		<version>5.2.20-RC1</version>
 		<relativePath>../</relativePath>
 	</parent>
 
 	<dependencies>
 		<dependency>
 			<groupId>uk.ac.ebi.biosamples</groupId>
 			<artifactId>biosamples-spring-boot-starter</artifactId>
-			<version>5.2.21-SNAPSHOT</version>
+			<version>5.2.20-RC1</version>
 		</dependency>
 		<dependency>
 			<groupId>uk.ac.ebi.biosamples</groupId>
 			<artifactId>models-sitemap</artifactId>
-			<version>5.2.21-SNAPSHOT</version>
+			<version>5.2.20-RC1</version>
 		</dependency>
 		<dependency>
 			<groupId>uk.ac.ebi.biosamples</groupId>
 			<artifactId>models-jsonld</artifactId>
-			<version>5.2.21-SNAPSHOT</version>
+			<version>5.2.20-RC1</version>
 		</dependency>
 		<dependency>
 			<groupId>org.springframework.hateoas</groupId>
@@ -78,7 +78,7 @@
 		<dependency>
 			<groupId>uk.ac.ebi.biosamples</groupId>
 			<artifactId>models-neo4j</artifactId>
-			<version>5.2.21-SNAPSHOT</version>
+			<version>5.2.20-RC1</version>
 			<scope>compile</scope>
 		</dependency>
 		<dependency>

diff --git a/messaging/pom.xml b/messaging/pom.xml
@@ -8,14 +8,14 @@
 	<parent>
 		<groupId>uk.ac.ebi.biosamples</groupId>
 		<artifactId>biosamples</artifactId>
-		<version>5.2.21-SNAPSHOT</version>
+		<version>5.2.20-RC1</version>
 	</parent>
 
 	<dependencies>
 		<dependency>
 			<groupId>uk.ac.ebi.biosamples</groupId>
 			<artifactId>models-core</artifactId>
-			<version>5.2.21-SNAPSHOT</version>
+			<version>5.2.20-RC1</version>
 		</dependency>
 		<dependency>
 			<groupId>org.springframework.boot</groupId>

diff --git a/models/common/pom.xml b/models/common/pom.xml
@@ -11,7 +11,7 @@
 	<parent>
 		<groupId>uk.ac.ebi.biosamples</groupId>
 		<artifactId>biosamples</artifactId>
-		<version>5.2.21-SNAPSHOT</version>
+		<version>5.2.20-RC1</version>
 		<relativePath>../../</relativePath>
 	</parent>