Added new R image. See #27742 #281
Workflow file for this run
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| --- | |
| name: Build and push d4science containers | |
| on: | |
| push: | |
| # only pushes on master so we don't push intermediate results to dockerhub | |
| branches: | |
| - master | |
| pull_request: | |
| jobs: | |
| detect-changes: | |
| uses: ./.github/workflows/build-list.yml | |
| with: | |
| base: d4science-base/Dockerfile | |
| images: | | |
| "single-user-d4science/Dockerfile" | |
| "single-user-sobigdata/Dockerfile" | |
| "single-user-3d-d4science/Dockerfile" | |
| "single-user-r-d4science/Dockerfile" | |
| "single-user-scientometrics-d4science/Dockerfile" | |
| "single-user-sobigdata-lipari23/Dockerfile" | |
| "single-user-sobigdata-aaai24/Dockerfile" | |
| "single-user-criticalzone/Dockerfile" | |
| "single-user-ecologicalrestorationlab/Dockerfile" | |
| "single-user-pluto-d4science/Dockerfile" | |
| "single-user-sobigdata-itineris/Dockerfile" | |
| base-image: | |
| name: Build base image | |
| needs: detect-changes | |
| if: needs.detect-changes.outputs.build-base == 1 | |
| runs-on: ubuntu-latest | |
| outputs: | |
| base: ${{ steps.docker_meta_base.outputs.tags }} | |
| steps: | |
| - name: try to make free space | |
| run: | | |
| sudo rm -rf /usr/share/dotnet | |
| sudo rm -rf /usr/local/lib/android | |
| sudo rm -rf /opt/ghc | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Docker meta | |
| id: docker_meta_base | |
| uses: docker/metadata-action@v5 | |
| with: | |
| images: ${{ github.repository_owner }}/notebooks-d4science-base | |
| tags: | | |
| type=sha | |
| - name: Set up QEMU | |
| uses: docker/setup-qemu-action@v3 | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: Build base | |
| uses: docker/build-push-action@v6 | |
| with: | |
| context: d4science-base | |
| tags: ${{ steps.docker_meta_base.outputs.tags }} | |
| labels: ${{ steps.docker_meta_base.outputs.labels }} | |
| outputs: type=docker,dest=/tmp/base.tar | |
| - name: Upload docker image as artifact | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: images | |
| path: /tmp/base.tar | |
| user-images: | |
| name: Build and push images | |
| if: fromJson(needs.detect-changes.outputs.matrix).image | |
| needs: [base-image, detect-changes] | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: ${{ fromJson(needs.detect-changes.outputs.matrix) }} | |
| steps: | |
| - name: try to make free space | |
| run: | | |
| sudo rm -rf /usr/share/dotnet | |
| sudo rm -rf /usr/local/lib/android | |
| sudo rm -rf /opt/ghc | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Docker meta | |
| id: docker_meta | |
| uses: docker/metadata-action@v5 | |
| with: | |
| images: eginotebooks/${{ matrix.image }} | |
| tags: | | |
| type=sha | |
| - name: Set up QEMU | |
| uses: docker/setup-qemu-action@v3 | |
| - name: Get previous build base | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: images | |
| path: /tmp | |
| - name: Load Docker images | |
| run: | | |
| docker load --input /tmp/base.tar | |
| # we are so scarce on storage that this needs to be cleared | |
| rm -rf /tmp/base.tar | |
| - name: Login to DockerHub | |
| uses: docker/login-action@v3 | |
| with: | |
| username: ${{ secrets.DOCKERHUB_USERNAME }} | |
| password: ${{ secrets.DOCKERHUB_TOKEN }} | |
| if: github.event_name != 'pull_request' | |
| # Unfortunately I haven't been able to load an prebuilt image here | |
| # so not using the build-push-action from docker | |
| # it's missing the labels and assumes tags is just one | |
| - name: Build full image | |
| run: | | |
| docker build \ | |
| --build-arg BASE_IMAGE=${{ needs.base-image.outputs.base }} \ | |
| --tag ${{ steps.docker_meta.outputs.tags }} \ | |
| --tag eginotebooks/${{ matrix.image }}:latest \ | |
| ${{ matrix.image }} | |
| - name: Push full image | |
| run: | | |
| docker push ${{ steps.docker_meta.outputs.tags }} | |
| docker push eginotebooks/${{ matrix.image }}:latest | |
| if: ${{ github.event_name != 'pull_request' }} | |
| - uses: addnab/docker-run-action@v3 | |
| with: | |
| image: ${{ steps.docker_meta.outputs.tags }} | |
| options: -v ${{ github.workspace }}/${{ matrix.image }}:/image-data | |
| run: | | |
| for f in /image-data/tests/*.ipynb; do | |
| if [ -e "$f" ]; then | |
| jupyter nbconvert --ExecutePreprocessor.timeout=600 --to rst \ | |
| --execute --stdout $f || exit 1 | |
| else | |
| true | |
| fi | |
| done |