diff --git a/single-user-sobigdata-lipari23/Dockerfile b/single-user-sobigdata-lipari23/Dockerfile index 942f19e0..a09ad546 100644 --- a/single-user-sobigdata-lipari23/Dockerfile +++ b/single-user-sobigdata-lipari23/Dockerfile @@ -8,7 +8,7 @@ # |___/ ARG BASE_IMAGE=eginotebooks/d4science-base:latest -# hadolint ignore=DL3006 + FROM $BASE_IMAGE USER root @@ -26,93 +26,6 @@ USER $NB_UID ARG SKLEARN_ALLOW_DEPRECATED_SKLEARN_PACKAGE_INSTALL=True -RUN mamba install -y --quiet \ - basemap \ - beakerx \ - xgboost \ - lightgbm \ - catboost \ - netcdf4 \ - aiohttp \ - graph-tool \ - scikit-learn \ - scikit-mobility \ - dask-jobqueue \ - fs \ - rasterio \ - contextily \ - nb_conda_kernels \ - nb_conda \ - && conda clean -tipsy - -# Pinned networkx to 2.6.3 as 2.7 makes networksns fail -RUN pip install --no-cache-dir \ - bicm \ - rdp \ - sentinelhub \ - import_ipynb \ - nbresuse \ - ndlib \ - motuclient \ - panel==0.9.* \ - cython \ - node_conformity \ - git+https://github.com/geopython/OWSLib.git \ - git+https://github.com/guglielmocola/RetweetCascade.git \ - fast-forward-indexes \ - NEMtropy \ - folium==0.11.0 \ - geopy==2.0.0 \ - hvplot==0.6.0 \ - intake==0.6.0 \ - intake-esm==2020.8.15 \ - hda \ - seaborn==0.11.0 \ - zarr==2.5.0 \ - holoviews \ - networkx==2.6.3 \ - networksns \ - eventclf \ - XAI-Library \ - convrewriting \ - git+https://github.com/guglielmocola/TwitterMonitorLib_v2.git \ - pygm \ - structify-net - -# ------------------------------- -# SoBigData ++ specific libraries -# ------------------------------- -RUN mamba install -y --quiet \ - pyspark \ - pyfim \ - pyclustering \ - transformers \ - rtree \ - geopandas \ - nltk \ - pydotplus \ - plotly \ - graphviz \ - keras \ - selenium \ - tweepy \ - openjdk=8 \ - && conda clean --all - -RUN mamba install -y pytorch==1.6.0 torchtext torchvision -c pytorch \ - && conda clean --all - -RUN pip install --no-cache-dir \ - import_ipynb \ - opencv-python \ - simpletransformers \ - shuffle-graph \ - privlib \ - ash_model \ - cdlib==0.3.0 \ - bayanpy \ - dynetx==0.3.2 - # ------------------------------- # SoBigData Lipari Summer School 2023 (https://sobigdata23.liparischool.it) # -------------------------------