deploy: 59abf08

branch/update-mvk-config/html/CIME_api/CIME.SystemTests.html

@@ -654,8 +654,41 @@ <h2>Submodules<a class="headerlink" href="#submodules" title="Link to this headi
 </dd></dl>
 
 </section>
-<section id="cime-systemtests-pgn-module">
-<h2>CIME.SystemTests.pgn module<a class="headerlink" href="#cime-systemtests-pgn-module" title="Link to this heading"></a></h2>
+<section id="module-CIME.SystemTests.pgn">
+<span id="cime-systemtests-pgn-module"></span><h2>CIME.SystemTests.pgn module<a class="headerlink" href="#module-CIME.SystemTests.pgn" title="Link to this heading"></a></h2>
+<p>Perturbation Growth New (PGN) - The CESM/ACME model’s
+multi-instance capability is used to conduct an ensemble
+of simulations starting from different initial conditions.</p>
+<p>This class inherits from SystemTestsCommon.</p>
+<dl class="py class">
+<dt class="sig sig-object py" id="CIME.SystemTests.pgn.PGN">
+<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">CIME.SystemTests.pgn.</span></span><span class="sig-name descname"><span class="pre">PGN</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">case</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/CIME/SystemTests/pgn.html#PGN"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#CIME.SystemTests.pgn.PGN" title="Link to this definition"></a></dt>
+<dd><p>Bases: <a class="reference internal" href="#CIME.SystemTests.system_tests_common.SystemTestsCommon" title="CIME.SystemTests.system_tests_common.SystemTestsCommon"><code class="xref py py-class docutils literal notranslate"><span class="pre">SystemTestsCommon</span></code></a></p>
+<dl class="py method">
+<dt class="sig sig-object py" id="CIME.SystemTests.pgn.PGN.build_phase">
+<span class="sig-name descname"><span class="pre">build_phase</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">sharedlib_only</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">model_only</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/CIME/SystemTests/pgn.html#PGN.build_phase"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#CIME.SystemTests.pgn.PGN.build_phase" title="Link to this definition"></a></dt>
+<dd><p>This is the default build phase implementation, it just does an individual build.
+This is the subclass’ extension point if they need to define a custom build
+phase.</p>
+<p>PLEASE THROW EXCEPTION ON FAIL</p>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="CIME.SystemTests.pgn.PGN.get_var_list">
+<span class="sig-name descname"><span class="pre">get_var_list</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/CIME/SystemTests/pgn.html#PGN.get_var_list"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#CIME.SystemTests.pgn.PGN.get_var_list" title="Link to this definition"></a></dt>
+<dd><p>Get variable list for pergro specific output vars</p>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="CIME.SystemTests.pgn.PGN.run_phase">
+<span class="sig-name descname"><span class="pre">run_phase</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/CIME/SystemTests/pgn.html#PGN.run_phase"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#CIME.SystemTests.pgn.PGN.run_phase" title="Link to this definition"></a></dt>
+<dd><p>This is the default run phase implementation, it just does an individual run.
+This is the subclass’ extension point if they need to define a custom run phase.</p>
+<p>PLEASE THROW AN EXCEPTION ON FAIL</p>
+</dd></dl>
+
+</dd></dl>
+
 </section>
 <section id="module-CIME.SystemTests.pre">
 <span id="cime-systemtests-pre-module"></span><h2>CIME.SystemTests.pre module<a class="headerlink" href="#module-CIME.SystemTests.pre" title="Link to this heading"></a></h2>

branch/update-mvk-config/html/CIME_api/CIME.XML.html

@@ -1125,6 +1125,11 @@ <h3>Returns<a class="headerlink" href="#returns" title="Link to this heading">
 <dd><p>Must default subgroup to something in order to provide single return value</p>
 </dd></dl>
 
+<dl class="py method">
+<dt class="sig sig-object py" id="CIME.XML.env_workflow.EnvWorkflow.hidden_job">
+<span class="sig-name descname"><span class="pre">hidden_job</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">case</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">job</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/CIME/XML/env_workflow.html#EnvWorkflow.hidden_job"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#CIME.XML.env_workflow.EnvWorkflow.hidden_job" title="Link to this definition"></a></dt>
+<dd></dd></dl>
+
 <dl class="py method">
 <dt class="sig sig-object py" id="CIME.XML.env_workflow.EnvWorkflow.set_value">
 <span class="sig-name descname"><span class="pre">set_value</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">item</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">value</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">subgroup</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">ignore_type</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/CIME/XML/env_workflow.html#EnvWorkflow.set_value"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#CIME.XML.env_workflow.EnvWorkflow.set_value" title="Link to this definition"></a></dt>

branch/update-mvk-config/html/CIME_api/CIME.scripts.html

@@ -215,7 +215,7 @@ <h2>Submodules<a class="headerlink" href="#submodules" title="Link to this headi
 <a class="reference external" href="https://github.com/ESMCI/cime">https://github.com/ESMCI/cime</a></p>
 <dl class="py function">
 <dt class="sig sig-object py" id="CIME.scripts.create_test.create_test">
-<span class="sig-prename descclassname"><span class="pre">CIME.scripts.create_test.</span></span><span class="sig-name descname"><span class="pre">create_test</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">test_names</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">test_data</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">compiler</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">machine_name</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">no_run</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">no_build</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">no_setup</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">no_batch</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">test_root</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">baseline_root</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">clean</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">baseline_cmp_name</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">baseline_gen_name</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">namelists_only</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">project</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">test_id</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">parallel_jobs</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">walltime</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">single_submit</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">proc_pool</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">use_existing</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">save_timing</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">queue</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">allow_baseline_overwrite</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">output_root</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">wait</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">force_procs</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">force_threads</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">mpilib</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">input_dir</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">pesfile</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">run_count</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">mail_user</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">mail_type</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">check_throughput</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">check_memory</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">ignore_namelists</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">ignore_diffs</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">ignore_memleak</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">allow_pnl</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">non_local</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">single_exe</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">workflow</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">chksum</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">force_rebuild</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/CIME/scripts/create_test.html#create_test"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#CIME.scripts.create_test.create_test" title="Link to this definition"></a></dt>
+<span class="sig-prename descclassname"><span class="pre">CIME.scripts.create_test.</span></span><span class="sig-name descname"><span class="pre">create_test</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">test_names</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">test_data</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">compiler</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">machine_name</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">no_run</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">no_build</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">no_setup</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">no_batch</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">test_root</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">baseline_root</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">clean</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">baseline_cmp_name</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">baseline_gen_name</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">namelists_only</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">project</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">test_id</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">parallel_jobs</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">walltime</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">single_submit</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">proc_pool</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">use_existing</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">save_timing</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">queue</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">allow_baseline_overwrite</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">output_root</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">wait</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">force_procs</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">force_threads</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">mpilib</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">input_dir</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">pesfile</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">run_count</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">mail_user</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">mail_type</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">check_throughput</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">check_memory</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">ignore_namelists</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">ignore_diffs</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">ignore_memleak</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">allow_pnl</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">non_local</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">single_exe</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">workflow</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">chksum</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">force_rebuild</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">driver</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/CIME/scripts/create_test.html#create_test"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#CIME.scripts.create_test.create_test" title="Link to this definition"></a></dt>
 <dd></dd></dl>
 
 <dl class="py function">

branch/update-mvk-config/html/CIME_api/modules.html

@@ -143,7 +143,7 @@ <h1>CIME<a class="headerlink" href="#cime" title="Link to this heading"></a><
 <li class="toctree-l4"><a class="reference internal" href="CIME.SystemTests.html#module-CIME.SystemTests.pem">CIME.SystemTests.pem module</a></li>
 <li class="toctree-l4"><a class="reference internal" href="CIME.SystemTests.html#module-CIME.SystemTests.pet">CIME.SystemTests.pet module</a></li>
 <li class="toctree-l4"><a class="reference internal" href="CIME.SystemTests.html#module-CIME.SystemTests.pfs">CIME.SystemTests.pfs module</a></li>
-<li class="toctree-l4"><a class="reference internal" href="CIME.SystemTests.html#cime-systemtests-pgn-module">CIME.SystemTests.pgn module</a></li>
+<li class="toctree-l4"><a class="reference internal" href="CIME.SystemTests.html#module-CIME.SystemTests.pgn">CIME.SystemTests.pgn module</a></li>
 <li class="toctree-l4"><a class="reference internal" href="CIME.SystemTests.html#module-CIME.SystemTests.pre">CIME.SystemTests.pre module</a></li>
 <li class="toctree-l4"><a class="reference internal" href="CIME.SystemTests.html#module-CIME.SystemTests.rep">CIME.SystemTests.rep module</a></li>
 <li class="toctree-l4"><a class="reference internal" href="CIME.SystemTests.html#module-CIME.SystemTests.restart_tests">CIME.SystemTests.restart_tests module</a></li>

branch/update-mvk-config/html/Tools_user/advanced-py-prof.html

@@ -154,9 +154,9 @@
 Traceback (most recent call last):
   File "<frozen runpy>", line 198, in _run_module_as_main
   File "<frozen runpy>", line 88, in _run_code
-  File "/opt/hostedtoolcache/Python/3.12.5/x64/lib/python3.12/cProfile.py", line 195, in <module>
+  File "/opt/hostedtoolcache/Python/3.12.6/x64/lib/python3.12/cProfile.py", line 195, in <module>
     main()
-  File "/opt/hostedtoolcache/Python/3.12.5/x64/lib/python3.12/cProfile.py", line 172, in main
+  File "/opt/hostedtoolcache/Python/3.12.6/x64/lib/python3.12/cProfile.py", line 172, in main
     with io.open_code(progname) as fp:
          ^^^^^^^^^^^^^^^^^^^^^^
 FileNotFoundError: [Errno 2] No such file or directory: 'basename'

branch/update-mvk-config/html/Tools_user/bless_test_results.html

@@ -151,7 +151,7 @@
 <div class="toctree-wrapper compound">
 </div>
 <div class="highlight-text notranslate"><div class="highlight"><pre><span></span>$ ./bless_test_results --help
-ERROR:  xmllint not found in PATH, xmllint is required for cime.  PATH=/opt/hostedtoolcache/Python/3.12.5/x64/bin:/opt/hostedtoolcache/Python/3.12.5/x64:/snap/bin:/home/runner/.local/bin:/opt/pipx_bin:/home/runner/.cargo/bin:/home/runner/.config/composer/vendor/bin:/usr/local/.ghcup/bin:/home/runner/.dotnet/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
+ERROR:  xmllint not found in PATH, xmllint is required for cime.  PATH=/opt/hostedtoolcache/Python/3.12.6/x64/bin:/opt/hostedtoolcache/Python/3.12.6/x64:/snap/bin:/home/runner/.local/bin:/opt/pipx_bin:/home/runner/.cargo/bin:/home/runner/.config/composer/vendor/bin:/usr/local/.ghcup/bin:/home/runner/.dotnet/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
 </pre></div>
 </div>
 </section>

branch/update-mvk-config/html/Tools_user/compare_test_results.html

@@ -151,7 +151,7 @@
 <div class="toctree-wrapper compound">
 </div>
 <div class="highlight-text notranslate"><div class="highlight"><pre><span></span>$ ./compare_test_results --help
-ERROR:  xmllint not found in PATH, xmllint is required for cime.  PATH=/opt/hostedtoolcache/Python/3.12.5/x64/bin:/opt/hostedtoolcache/Python/3.12.5/x64:/snap/bin:/home/runner/.local/bin:/opt/pipx_bin:/home/runner/.cargo/bin:/home/runner/.config/composer/vendor/bin:/usr/local/.ghcup/bin:/home/runner/.dotnet/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
+ERROR:  xmllint not found in PATH, xmllint is required for cime.  PATH=/opt/hostedtoolcache/Python/3.12.6/x64/bin:/opt/hostedtoolcache/Python/3.12.6/x64:/snap/bin:/home/runner/.local/bin:/opt/pipx_bin:/home/runner/.cargo/bin:/home/runner/.config/composer/vendor/bin:/usr/local/.ghcup/bin:/home/runner/.dotnet/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
 </pre></div>
 </div>
 </section>