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Dockerfile-lite
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FROM brmather/pygplates-course:19-base
ENV NB_USER jovyan
EXPOSE 8888
# note we also use xvfb which is required for viz
ENTRYPOINT ["/usr/local/bin/tini", "--"]
CMD ["/home/ipython/work/ipython_notebook.sh"]
# Add pygplates stuff to PYTHONPATH
ENV PYTHONPATH ${PYTHONPATH}:/usr/lib:/usr/local/lib/pygplates/revision19/
ADD --chown=jovyan:jovyan . /home/$NB_USER/
# More dependencies...
RUN python2 -m pip install --no-cache-dir healpy jupyter
# Copy GPlatesClassStruggle to Resources directory
RUN git clone https://github.com/siwill22/GPlatesClassStruggle.git && \
mkdir /home/$NB_USER/Resources/GPlatesClassStruggle && \
mv GPlatesClassStruggle/*.py /home/$NB_USER/Resources/GPlatesClassStruggle/ && \
rm -rf GPlatesClassStruggle
# Copy gwstools
RUN git clone https://github.com/siwill22/gwstools.git && \
mv gwstools/*.py /home/$NB_USER/Resources/GPlatesClassStruggle/ && \
rm -rf gwstools
# Copy platetree
RUN git clone https://github.com/siwill22/platetree.git && \
mv platetree/*.py /home/$NB_USER/Resources/GPlatesClassStruggle/ && \
rm -rf platetree
# Copy ATOM tools
RUN git clone https://github.com/siwill22/atom_utils.git && \
mv atom_utils/*.py /home/$NB_USER/Resources/GPlatesClassStruggle/ && \
rm -rf atom_utils
# change ownership of everything
RUN chown -R jovyan:jovyan /home/jovyan
USER jovyan
VOLUME /home/jovyan/workspace
WORKDIR /home/jovyan/
# Trust all notebooks
RUN find -name \*.ipynb -print0 | xargs -0 jupyter trust
# launch notebook
CMD ["jupyter", "notebook", "--ip='0.0.0.0'", "--NotebookApp.token='' ", "--no-browser"]