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Use new DataFrames syntax (#33)
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* docs make fix

* add julia 1.3 and update DataFrames syntax

* remove plots from documentation

* include Manifest

* Fix merge conflict

* fix Manifest
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@kescobo
kescobo authored Sep 19, 2019
1 parent 20753a3 commit aff8a27
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1 change: 0 additions & 1 deletion .gitignore
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Expand Up @@ -5,4 +5,3 @@ scratch*
*.jl.mem
docs/build/
docs/site/
Manifest.toml
5 changes: 4 additions & 1 deletion .travis.yml
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Expand Up @@ -6,6 +6,7 @@ os:
julia:
- 1.1
- 1.2
- 1.3
- nightly
notifications:
email: false
Expand All @@ -14,7 +15,9 @@ notifications:
# (tests will run but not make your overall status red)
matrix:
allow_failures:
- julia: nightly
- julia:
- 1.3
- nightly

## uncomment and modify the following lines to manually install system packages
#addons:
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254 changes: 254 additions & 0 deletions Manifest.toml
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# This file is machine-generated - editing it directly is not advised

[[Arpack]]
deps = ["BinaryProvider", "Libdl", "LinearAlgebra"]
git-tree-sha1 = "07a2c077bdd4b6d23a40342a8a108e2ee5e58ab6"
uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97"
version = "0.3.1"

[[Base64]]
uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"

[[BinaryProvider]]
deps = ["Libdl", "Logging", "SHA"]
git-tree-sha1 = "c7361ce8a2129f20b0e05a89f7070820cfed6648"
uuid = "b99e7846-7c00-51b0-8f62-c81ae34c0232"
version = "0.5.6"

[[CategoricalArrays]]
deps = ["Compat", "DataAPI", "Future", "JSON", "Missings", "Printf", "Reexport", "Unicode"]
git-tree-sha1 = "5f4400b24adb1fbed17a9dcc1e8ab8aaf5b03d1f"
uuid = "324d7699-5711-5eae-9e2f-1d82baa6b597"
version = "0.6.0"

[[Compat]]
deps = ["Base64", "Dates", "DelimitedFiles", "Distributed", "InteractiveUtils", "LibGit2", "Libdl", "LinearAlgebra", "Markdown", "Mmap", "Pkg", "Printf", "REPL", "Random", "Serialization", "SharedArrays", "Sockets", "SparseArrays", "Statistics", "Test", "UUIDs", "Unicode"]
git-tree-sha1 = "84aa74986c5b9b898b0d1acaf3258741ee64754f"
uuid = "34da2185-b29b-5c13-b0c7-acf172513d20"
version = "2.1.0"

[[DataAPI]]
git-tree-sha1 = "8903f0219d3472543fc4b2f5ebaf675a07f817c0"
uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a"
version = "1.0.1"

[[DataFrames]]
deps = ["CategoricalArrays", "Compat", "DataAPI", "InvertedIndices", "IteratorInterfaceExtensions", "Missings", "PooledArrays", "Printf", "REPL", "Reexport", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"]
git-tree-sha1 = "271528230c65a4517522e2968c3deed76b92b998"
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version = "0.19.4"

[[DataFramesMeta]]
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version = "0.5.0"

[[DataStructures]]
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version = "0.17.0"

[[DataValueInterfaces]]
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[[Dates]]
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[[DelimitedFiles]]
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[[Distributed]]
deps = ["Random", "Serialization", "Sockets"]
uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b"

[[EcoBase]]
deps = ["Compat", "RecipesBase"]
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uuid = "a58aae7d-b440-5a11-b283-399458f99aac"
version = "0.0.7"

[[Future]]
deps = ["Random"]
uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820"

[[InteractiveUtils]]
deps = ["Markdown"]
uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240"

[[InvertedIndices]]
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git-tree-sha1 = "15732c475062348b0165684ffe28e85ea8396afc"
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[[IteratorInterfaceExtensions]]
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[[JSON]]
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git-tree-sha1 = "b34d7cef7b337321e97d22242c3c2b91f476748e"
uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6"
version = "0.21.0"

[[LibGit2]]
uuid = "76f85450-5226-5b5a-8eaa-529ad045b433"

[[Libdl]]
uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb"

[[LinearAlgebra]]
deps = ["Libdl"]
uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"

[[Logging]]
uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"

[[Markdown]]
deps = ["Base64"]
uuid = "d6f4376e-aef5-505a-96c1-9c027394607a"

[[Missings]]
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version = "0.4.2"

[[Mmap]]
uuid = "a63ad114-7e13-5084-954f-fe012c677804"

[[MultivariateStats]]
deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsBase"]
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uuid = "6f286f6a-111f-5878-ab1e-185364afe411"
version = "0.7.0"

[[OrderedCollections]]
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[[Parsers]]
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[[Pkg]]
deps = ["Dates", "LibGit2", "Markdown", "Printf", "REPL", "Random", "SHA", "UUIDs"]
uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"

[[PooledArrays]]
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version = "0.5.2"

[[Printf]]
deps = ["Unicode"]
uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7"

[[REPL]]
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uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb"

[[Random]]
deps = ["Serialization"]
uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"

[[RandomBooleanMatrices]]
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version = "0.1.1"

[[RandomNumbers]]
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git-tree-sha1 = "1417be19c15706c1584d01e32662eb640a4cc908"
uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143"
version = "1.3.0"

[[RecipesBase]]
git-tree-sha1 = "7bdce29bc9b2f5660a6e5e64d64d91ec941f6aa2"
uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01"
version = "0.7.0"

[[Reexport]]
deps = ["Pkg"]
git-tree-sha1 = "7b1d07f411bc8ddb7977ec7f377b97b158514fe0"
uuid = "189a3867-3050-52da-a836-e630ba90ab69"
version = "0.2.0"

[[Requires]]
deps = ["Test"]
git-tree-sha1 = "f6fbf4ba64d295e146e49e021207993b6b48c7d1"
uuid = "ae029012-a4dd-5104-9daa-d747884805df"
version = "0.5.2"

[[SHA]]
uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce"

[[Serialization]]
uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b"

[[SharedArrays]]
deps = ["Distributed", "Mmap", "Random", "Serialization"]
uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383"

[[Sockets]]
uuid = "6462fe0b-24de-5631-8697-dd941f90decc"

[[SortingAlgorithms]]
deps = ["DataStructures", "Random", "Test"]
git-tree-sha1 = "03f5898c9959f8115e30bc7226ada7d0df554ddd"
uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c"
version = "0.3.1"

[[SparseArrays]]
deps = ["LinearAlgebra", "Random"]
uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"

[[SpatialEcology]]
deps = ["DataFrames", "DataFramesMeta", "EcoBase", "Random", "RandomBooleanMatrices", "RandomNumbers", "RecipesBase", "SparseArrays", "Statistics", "StatsBase", "Test"]
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uuid = "348f2d5d-71a3-5ad4-b565-8af070f99681"
version = "0.7.0"

[[Statistics]]
deps = ["LinearAlgebra", "SparseArrays"]
uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"

[[StatsBase]]
deps = ["DataAPI", "DataStructures", "LinearAlgebra", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics"]
git-tree-sha1 = "c53e809e63fe5cf5de13632090bc3520649c9950"
uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"
version = "0.32.0"

[[TableTraits]]
deps = ["IteratorInterfaceExtensions"]
git-tree-sha1 = "b1ad568ba658d8cbb3b892ed5380a6f3e781a81e"
uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c"
version = "1.0.0"

[[Tables]]
deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "TableTraits", "Test"]
git-tree-sha1 = "aaed7b3b00248ff6a794375ad6adf30f30ca5591"
uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c"
version = "0.2.11"

[[Test]]
deps = ["Distributed", "InteractiveUtils", "Logging", "Random"]
uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40"

[[UUIDs]]
deps = ["Random", "SHA"]
uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4"

[[Unicode]]
uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5"
2 changes: 2 additions & 0 deletions Project.toml
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Expand Up @@ -15,6 +15,8 @@ Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
StatsBase = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"

[compat]
DataFrames = "≥ 0.19"
MultivariateStats = "≥ 0.7"
julia = "1.1, 1.2"

[extras]
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8 comments on commit aff8a27

@kescobo
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@bioreg register()

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@bioreg register()

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@BioJuliaBot register

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Registration pull request updated: BioJulia/BioJuliaRegistry/21

After the above pull request is merged, it is recommended that a tag is created on this repository for the registered package version.

This will be done automatically if Julia TagBot is installed, or can be done manually through the github interface, or via:

git tag -a v0.5.0 -m "<description of version>" aff8a27146c4fddb91c1e2df753692c2fe07a581
git push origin v0.5.0

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Error while trying to register: "Tag with name v0.5.0 already exists and points to a different commit"

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Registration pull request created: JuliaRegistries/General/15297

After the above pull request is merged, it is recommended that a tag is created on this repository for the registered package version.

This will be done automatically if the Julia TagBot GitHub Action is installed, or can be done manually through the github interface, or via:

git tag -a v0.5.0 -m "<description of version>" aff8a27146c4fddb91c1e2df753692c2fe07a581
git push origin v0.5.0

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