add inference #337
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| name: Testing | |
| on: | |
| push: | |
| branches: | |
| - dev | |
| tags: | |
| - 'v*' | |
| pull_request: | |
| permissions: # needed to allow julia-actions/cache to proactively delete old caches that it has created | |
| actions: write | |
| contents: read | |
| jobs: | |
| phylo-tests: | |
| name: Julia ${{ matrix.julia-version }} - ${{ matrix.os }} - ${{ matrix.arch }} - ${{ github.event_name }} | |
| timeout-minutes: 60 | |
| runs-on: ${{ matrix.os }} | |
| continue-on-error: false | |
| strategy: | |
| matrix: | |
| julia-version: | |
| - '1.6' | |
| - '1' | |
| os: | |
| - ubuntu-latest | |
| - macOS-latest | |
| - windows-latest | |
| arch: | |
| - x64 | |
| - arm64 | |
| r-testing: | |
| - ${{ true }} | |
| - ${{ false }} | |
| exclude: | |
| - os: macOS-latest | |
| julia-version: '1.6' | |
| arch: arm64 | |
| - os: macOS-latest | |
| julia-version: '1' | |
| arch: x64 | |
| - os: ubuntu-latest | |
| arch: arm64 | |
| - os: windows-latest | |
| arch: arm64 | |
| - os: ubuntu-latest | |
| r-testing: ${{ true }} | |
| - os: windows-latest | |
| r-testing: ${{ true }} | |
| - os: macOS-latest | |
| r-testing: ${{ false }} | |
| fail-fast: false | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| - name: Set up julia | |
| uses: julia-actions/setup-julia@v2 | |
| with: | |
| version: ${{ matrix.julia-version }} | |
| arch: ${{ matrix.arch }} | |
| - name: Install R | |
| if: ${{ matrix.r-testing }} | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: 'release' | |
| use-public-rspm: true | |
| - name: Install ape | |
| if: ${{ matrix.r-testing }} | |
| run: | | |
| install.packages("ape", repos="http://cran.r-project.org") | |
| install.packages("phylolm", repos="http://cran.r-project.org") | |
| shell: R --vanilla --file={0} | |
| - name: Cache | |
| uses: julia-actions/cache@v2 | |
| - name: Build package | |
| uses: julia-actions/julia-buildpkg@v1 | |
| - name: Running | |
| uses: julia-actions/julia-runtest@v1 | |
| - name: Process coverage | |
| uses: julia-actions/julia-processcoverage@v1 | |
| - name: Codecov | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| verbose: true |