Allow new files in repo

Project.toml

@@ -40,10 +40,13 @@ DataFrames = "1"
 DataStructures = "0.17, 0.18"
 Distances = "0.10"
 Distributions = "0.24, 0.25"
+Git = "1"
 Graphs = "1"
 IterableTables = "1"
+Logging = "1"
 Missings = "1"
 ParserCombinator = "2"
+Pkg = "1.6"
 Plots = "1"
 Printf = "1.6"
 RCall = "0.13, 0.14"
@@ -78,9 +81,12 @@ orcid = "0000-0003-0852-2340"
 
 [extras]
 DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
+Git = "d7ba0133-e1db-5d97-8f8c-041e4b3a1eb2"
+Logging = "56ddb016-857b-54e1-b83d-db4d58db5568"
+Pkg = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"
 Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80"
 RCall = "6f49c342-dc21-5d91-9882-a32aef131414"
 Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
 
 [targets]
-test = ["DataFrames", "Plots", "RCall", "Test"]
+test = ["DataFrames", "Git", "Logging", "Pkg", "Plots", "RCall", "Test"]

test/runtests.jl

@@ -3,6 +3,9 @@
 using Random
 using Test
 using Phylo
+using Pkg
+
+Pkg.develop(url = "https://github.com/richardreeve/ResearchSoftwareMetadata.jl.git")
 
 # Identify files in test/ that are testing matching files in src/
 #  - src/Source.jl will be matched by test/test_Source.jl

test/test_Phylo.jl

@@ -2,8 +2,29 @@
 
 module TestPhylo
 using Test
-
 using Phylo
+using Git
+using Logging
+using ResearchSoftwareMetadata
+
+function is_repo_clean(repo_path)
+    # Get the status of the repository
+    statuses = readlines(`$(Git.git()) status -s $repo_path`)
+    statuses = filter((!)∘contains("??"), statuses)
+
+    is_clean = isempty(statuses)
+    is_clean || @error "\n" * join(statuses, "\n")
+
+    return is_clean
+end
+
+@testset "RSMD" begin
+    git_dir = readchomp(`$(Git.git()) rev-parse --show-toplevel`)
+    @test isnothing(ResearchSoftwareMetadata.crosswalk())
+    global_logger(SimpleLogger(stderr, Logging.Warn))
+    @test_nowarn ResearchSoftwareMetadata.crosswalk()
+    @test is_repo_clean(git_dir)
+end
 
 @testset "Deprecations" begin
     t = NamedTree()