This is a research compendium for a NASA CMS proposal comparing estimates of above-ground biomass in Arizona from different data products. This is a collaboration between CCT-Data Science and the David Moore lab at University of Arizona.
This project uses
renv for package
management. When opening this repo as an RStudio Project for the first
time, renv should automatically install itself and prompt you to run
renv::restore() to install all package dependencies.
This project uses the targets
package for workflow management.
Run targets::tar_make() from the console to run the workflow and
reproduce all results. The graph below shows the workflow:
Loading required namespace: terra
graph LR
style Legend fill:#FFFFFF00,stroke:#000000;
style Graph fill:#FFFFFF00,stroke:#000000;
subgraph Legend
direction LR
xf1522833a4d242c5([""Up to date""]):::uptodate --- x2db1ec7a48f65a9b([""Outdated""]):::outdated
x2db1ec7a48f65a9b([""Outdated""]):::outdated --- xb6630624a7b3aa0f([""Dispatched""]):::dispatched
xb6630624a7b3aa0f([""Dispatched""]):::dispatched --- xd03d7c7dd2ddda2b([""Stem""]):::none
xd03d7c7dd2ddda2b([""Stem""]):::none --- x6f7e04ea3427f824[""Pattern""]:::none
end
subgraph Graph
direction LR
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xd175b91b13bd123d(["az"]):::uptodate --> x0af3feb37501f1f0(["agb_map_az_pdf<br>az pdf"]):::uptodate
xf66cf75dc2e3304d(["conus"]):::uptodate --> x20b6251b56892c2a(["esa_agb"]):::uptodate
x151ce04cb638b59b(["esa_files"]):::uptodate --> x20b6251b56892c2a(["esa_agb"]):::uptodate
x0c544fc75086be79(["agb_stack"]):::uptodate --> xbccfd088a963c01b(["median_map_ca_png<br>ca png"]):::uptodate
xb65229902e01e989(["ca"]):::uptodate --> xbccfd088a963c01b(["median_map_ca_png<br>ca png"]):::uptodate
x0c544fc75086be79(["agb_stack"]):::uptodate --> xa136827e6574e960(["sd_map_srer_png<br>srer png"]):::outdated
x0838d78c836918b1(["srer"]):::uptodate --> xa136827e6574e960(["sd_map_srer_png<br>srer png"]):::outdated
x0c544fc75086be79(["agb_stack"]):::uptodate --> x8fb024c3aab62b0a(["ridge_srer_png<br>png"]):::outdated
x0838d78c836918b1(["srer"]):::uptodate --> x8fb024c3aab62b0a(["ridge_srer_png<br>png"]):::outdated
x0c544fc75086be79(["agb_stack"]):::uptodate --> x1aa834f106e1d0d0(["agb_map_ca_pdf<br>ca pdf"]):::uptodate
xb65229902e01e989(["ca"]):::uptodate --> x1aa834f106e1d0d0(["agb_map_ca_pdf<br>ca pdf"]):::uptodate
xf66cf75dc2e3304d(["conus"]):::uptodate --> x9126df164c036a5c(["liu_agb"]):::uptodate
x20b6251b56892c2a(["esa_agb"]):::uptodate --> x9126df164c036a5c(["liu_agb"]):::uptodate
x19766d176d835c12(["liu_file"]):::uptodate --> x9126df164c036a5c(["liu_agb"]):::uptodate
x0c544fc75086be79(["agb_stack"]):::uptodate --> xdc1de5d64600818c(["agb_map_pima_pdf<br>pima pdf"]):::outdated
xc7806e6395dc77f0(["pima"]):::uptodate --> xdc1de5d64600818c(["agb_map_pima_pdf<br>pima pdf"]):::outdated
x0c544fc75086be79(["agb_stack"]):::uptodate --> x5d46a426d10236f5(["sd_map_az_png<br>az png"]):::uptodate
xd175b91b13bd123d(["az"]):::uptodate --> x5d46a426d10236f5(["sd_map_az_png<br>az png"]):::uptodate
xf66cf75dc2e3304d(["conus"]):::uptodate --> xad3c233602b55f5e(["gedi_agb"]):::uptodate
x20b6251b56892c2a(["esa_agb"]):::uptodate --> xad3c233602b55f5e(["gedi_agb"]):::uptodate
x9ba8e1bb2da79809(["gedi_file"]):::uptodate --> xad3c233602b55f5e(["gedi_agb"]):::uptodate
x56e33593de092521(["site_locs"]):::uptodate --> xf0a521e2ad8827d0(["sites_wide_csv"]):::uptodate
x6d5be946c901f1fc(["sites_chopping_agb<br>chopping_agb"]):::uptodate --> xf0a521e2ad8827d0(["sites_wide_csv"]):::uptodate
xdd5a1d9a1fcef4e4(["sites_esa_agb<br>esa_agb"]):::uptodate --> xf0a521e2ad8827d0(["sites_wide_csv"]):::uptodate
x59d51c69de76369b(["sites_gedi_agb<br>gedi_agb"]):::uptodate --> xf0a521e2ad8827d0(["sites_wide_csv"]):::uptodate
x12e2b32cf8941e93(["sites_liu_agb<br>liu_agb"]):::uptodate --> xf0a521e2ad8827d0(["sites_wide_csv"]):::uptodate
xb55d23a3c1d98299(["sites_ltgnn_agb<br>ltgnn_agb"]):::uptodate --> xf0a521e2ad8827d0(["sites_wide_csv"]):::uptodate
x723c460ba435f63e(["sites_menlove_agb<br>menlove_agb"]):::uptodate --> xf0a521e2ad8827d0(["sites_wide_csv"]):::uptodate
xf0221f83c716da5d(["sites_xu_agb<br>xu_agb"]):::uptodate --> xf0a521e2ad8827d0(["sites_wide_csv"]):::uptodate
x0c544fc75086be79(["agb_stack"]):::uptodate --> x80760e6101e4cb1d(["sd_map_srer_pdf<br>srer pdf"]):::outdated
x0838d78c836918b1(["srer"]):::uptodate --> x80760e6101e4cb1d(["sd_map_srer_pdf<br>srer pdf"]):::outdated
x0c544fc75086be79(["agb_stack"]):::uptodate --> x05a99b56c623bdbf(["median_map_pima_png<br>pima png"]):::outdated
xc7806e6395dc77f0(["pima"]):::uptodate --> x05a99b56c623bdbf(["median_map_pima_png<br>pima png"]):::outdated
x693953566a2ca630(["agb_df_az"]):::uptodate --> x2d046568113c38ec["scatter_plots"]:::outdated
xfe340e9d3143cfe1(["plot_comparisons"]):::outdated --> x2d046568113c38ec["scatter_plots"]:::outdated
x434f37652a8b2dac(["menlove_agb"]):::uptodate --> x723c460ba435f63e(["sites_menlove_agb<br>menlove_agb"]):::uptodate
x56e33593de092521(["site_locs"]):::uptodate --> x723c460ba435f63e(["sites_menlove_agb<br>menlove_agb"]):::uptodate
x0c544fc75086be79(["agb_stack"]):::uptodate --> x6f9571f76fb08c01(["sd_map_ca_png<br>ca png"]):::uptodate
xb65229902e01e989(["ca"]):::uptodate --> x6f9571f76fb08c01(["sd_map_ca_png<br>ca png"]):::uptodate
x34fa7583752e3167(["chopping_file"]):::uptodate --> xf4e158caecdccb15(["chopping_agb"]):::uptodate
xf66cf75dc2e3304d(["conus"]):::uptodate --> xf4e158caecdccb15(["chopping_agb"]):::uptodate
x20b6251b56892c2a(["esa_agb"]):::uptodate --> xf4e158caecdccb15(["chopping_agb"]):::uptodate
x0c544fc75086be79(["agb_stack"]):::uptodate --> x8fdb741d59a9d9f7(["agb_map_pima_png<br>pima png"]):::outdated
xc7806e6395dc77f0(["pima"]):::uptodate --> x8fdb741d59a9d9f7(["agb_map_pima_png<br>pima png"]):::outdated
x0c544fc75086be79(["agb_stack"]):::uptodate --> xcb744cc5b3c011de(["median_map_az_png<br>az png"]):::uptodate
xd175b91b13bd123d(["az"]):::uptodate --> xcb744cc5b3c011de(["median_map_az_png<br>az png"]):::uptodate
x0c544fc75086be79(["agb_stack"]):::uptodate --> x9db81f788ddc3e77(["ridge_az_png<br>png"]):::uptodate
xd175b91b13bd123d(["az"]):::uptodate --> x9db81f788ddc3e77(["ridge_az_png<br>png"]):::uptodate
x0c544fc75086be79(["agb_stack"]):::uptodate --> x0838d78c836918b1(["srer"]):::uptodate
xf2a8a94e15c1f5bb(["srer_dir"]):::uptodate --> x0838d78c836918b1(["srer"]):::uptodate
x0c544fc75086be79(["agb_stack"]):::uptodate --> x9026d3689638e855(["ridge_pima_png<br>png"]):::outdated
xc7806e6395dc77f0(["pima"]):::uptodate --> x9026d3689638e855(["ridge_pima_png<br>png"]):::outdated
x0c544fc75086be79(["agb_stack"]):::uptodate --> x870b061d4d3330a9(["median_map_ca_pdf<br>ca pdf"]):::uptodate
xb65229902e01e989(["ca"]):::uptodate --> x870b061d4d3330a9(["median_map_ca_pdf<br>ca pdf"]):::uptodate
xad3c233602b55f5e(["gedi_agb"]):::uptodate --> x59d51c69de76369b(["sites_gedi_agb<br>gedi_agb"]):::uptodate
x56e33593de092521(["site_locs"]):::uptodate --> x59d51c69de76369b(["sites_gedi_agb<br>gedi_agb"]):::uptodate
xd175b91b13bd123d(["az"]):::uptodate --> xe11d03c8a0dcbd3e(["subsets"]):::outdated
xb65229902e01e989(["ca"]):::uptodate --> xe11d03c8a0dcbd3e(["subsets"]):::outdated
xc7806e6395dc77f0(["pima"]):::uptodate --> xe11d03c8a0dcbd3e(["subsets"]):::outdated
x0838d78c836918b1(["srer"]):::uptodate --> xe11d03c8a0dcbd3e(["subsets"]):::outdated
x0c544fc75086be79(["agb_stack"]):::uptodate --> x6ded25abd13901dd(["agb_map_srer_png<br>srer png"]):::outdated
x0838d78c836918b1(["srer"]):::uptodate --> x6ded25abd13901dd(["agb_map_srer_png<br>srer png"]):::outdated
x982c4ea78b58d1bb(["ca_az"]):::uptodate --> x0c544fc75086be79(["agb_stack"]):::uptodate
xf4e158caecdccb15(["chopping_agb"]):::uptodate --> x0c544fc75086be79(["agb_stack"]):::uptodate
x20b6251b56892c2a(["esa_agb"]):::uptodate --> x0c544fc75086be79(["agb_stack"]):::uptodate
xad3c233602b55f5e(["gedi_agb"]):::uptodate --> x0c544fc75086be79(["agb_stack"]):::uptodate
x9126df164c036a5c(["liu_agb"]):::uptodate --> x0c544fc75086be79(["agb_stack"]):::uptodate
xf99622c5fc8ef45a(["ltgnn_agb"]):::uptodate --> x0c544fc75086be79(["agb_stack"]):::uptodate
x434f37652a8b2dac(["menlove_agb"]):::uptodate --> x0c544fc75086be79(["agb_stack"]):::uptodate
x55cd1a25824d6c45(["xu_agb"]):::uptodate --> x0c544fc75086be79(["agb_stack"]):::uptodate
xd15cf4874a3c1896(["neon_field_path"]):::uptodate --> x56e33593de092521(["site_locs"]):::uptodate
x17e6721300ec7ca6(["neon_kmz"]):::uptodate --> x56e33593de092521(["site_locs"]):::uptodate
x0c544fc75086be79(["agb_stack"]):::uptodate --> xbe39f12168f1b406(["sd_map_az_pdf<br>az pdf"]):::uptodate
xd175b91b13bd123d(["az"]):::uptodate --> xbe39f12168f1b406(["sd_map_az_pdf<br>az pdf"]):::uptodate
xf66cf75dc2e3304d(["conus"]):::uptodate --> x55cd1a25824d6c45(["xu_agb"]):::uptodate
x20b6251b56892c2a(["esa_agb"]):::uptodate --> x55cd1a25824d6c45(["xu_agb"]):::uptodate
x4f83a8bb6986eb55(["xu_file"]):::uptodate --> x55cd1a25824d6c45(["xu_agb"]):::uptodate
x0c544fc75086be79(["agb_stack"]):::uptodate --> x98aa47b23555b2af(["sd_map_pima_pdf<br>pima pdf"]):::outdated
xc7806e6395dc77f0(["pima"]):::uptodate --> x98aa47b23555b2af(["sd_map_pima_pdf<br>pima pdf"]):::outdated
x0c544fc75086be79(["agb_stack"]):::uptodate --> x1057db013368d12d(["median_map_pima_pdf<br>pima pdf"]):::outdated
xc7806e6395dc77f0(["pima"]):::uptodate --> x1057db013368d12d(["median_map_pima_pdf<br>pima pdf"]):::outdated
x0c544fc75086be79(["agb_stack"]):::uptodate --> xb9c1d12e637f675e(["median_map_srer_pdf<br>srer pdf"]):::outdated
x0838d78c836918b1(["srer"]):::uptodate --> xb9c1d12e637f675e(["median_map_srer_pdf<br>srer pdf"]):::outdated
xf99622c5fc8ef45a(["ltgnn_agb"]):::uptodate --> xb55d23a3c1d98299(["sites_ltgnn_agb<br>ltgnn_agb"]):::uptodate
x56e33593de092521(["site_locs"]):::uptodate --> xb55d23a3c1d98299(["sites_ltgnn_agb<br>ltgnn_agb"]):::uptodate
x0c544fc75086be79(["agb_stack"]):::uptodate --> x99b6ef97d01b006a(["sd_map_ca_pdf<br>ca pdf"]):::uptodate
xb65229902e01e989(["ca"]):::uptodate --> x99b6ef97d01b006a(["sd_map_ca_pdf<br>ca pdf"]):::uptodate
x20b6251b56892c2a(["esa_agb"]):::uptodate --> xdd5a1d9a1fcef4e4(["sites_esa_agb<br>esa_agb"]):::uptodate
x56e33593de092521(["site_locs"]):::uptodate --> xdd5a1d9a1fcef4e4(["sites_esa_agb<br>esa_agb"]):::uptodate
x9126df164c036a5c(["liu_agb"]):::uptodate --> x12e2b32cf8941e93(["sites_liu_agb<br>liu_agb"]):::uptodate
x56e33593de092521(["site_locs"]):::uptodate --> x12e2b32cf8941e93(["sites_liu_agb<br>liu_agb"]):::uptodate
xf66cf75dc2e3304d(["conus"]):::uptodate --> x434f37652a8b2dac(["menlove_agb"]):::uptodate
x20b6251b56892c2a(["esa_agb"]):::uptodate --> x434f37652a8b2dac(["menlove_agb"]):::uptodate
xb2d478ff7b617081(["menlove_dir"]):::uptodate --> x434f37652a8b2dac(["menlove_agb"]):::uptodate
x0c544fc75086be79(["agb_stack"]):::uptodate --> x494a8da183e6456e(["ridge_ca_png<br>png"]):::uptodate
xb65229902e01e989(["ca"]):::uptodate --> x494a8da183e6456e(["ridge_ca_png<br>png"]):::uptodate
x0c544fc75086be79(["agb_stack"]):::uptodate --> xa873944eb0f3630d(["median_map_az_pdf<br>az pdf"]):::uptodate
xd175b91b13bd123d(["az"]):::uptodate --> xa873944eb0f3630d(["median_map_az_pdf<br>az pdf"]):::uptodate
x0c544fc75086be79(["agb_stack"]):::uptodate --> x67bb6dac1619a9fe(["agb_map_az_png<br>az png"]):::uptodate
xd175b91b13bd123d(["az"]):::uptodate --> x67bb6dac1619a9fe(["agb_map_az_png<br>az png"]):::uptodate
x0c544fc75086be79(["agb_stack"]):::uptodate --> xd175b91b13bd123d(["az"]):::uptodate
x0c544fc75086be79(["agb_stack"]):::uptodate --> x599ce45254dfcf12(["median_map_srer_png<br>srer png"]):::outdated
x0838d78c836918b1(["srer"]):::uptodate --> x599ce45254dfcf12(["median_map_srer_png<br>srer png"]):::outdated
x0c544fc75086be79(["agb_stack"]):::uptodate --> xfcb3304ed0ccad58(["agb_map_ca_png<br>ca png"]):::outdated
xb65229902e01e989(["ca"]):::uptodate --> xfcb3304ed0ccad58(["agb_map_ca_png<br>ca png"]):::outdated
xf4e158caecdccb15(["chopping_agb"]):::uptodate --> x6d5be946c901f1fc(["sites_chopping_agb<br>chopping_agb"]):::uptodate
x56e33593de092521(["site_locs"]):::uptodate --> x6d5be946c901f1fc(["sites_chopping_agb<br>chopping_agb"]):::uptodate
x0c544fc75086be79(["agb_stack"]):::uptodate --> x1df925585a964a4f["summary_stats"]:::outdated
xe11d03c8a0dcbd3e(["subsets"]):::outdated --> x1df925585a964a4f["summary_stats"]:::outdated
x0c544fc75086be79(["agb_stack"]):::uptodate --> x7ad56487cc88740a(["agb_map_srer_pdf<br>srer pdf"]):::outdated
x0838d78c836918b1(["srer"]):::uptodate --> x7ad56487cc88740a(["agb_map_srer_pdf<br>srer pdf"]):::outdated
x0c544fc75086be79(["agb_stack"]):::uptodate --> xb65229902e01e989(["ca"]):::uptodate
x56e33593de092521(["site_locs"]):::uptodate --> xf0221f83c716da5d(["sites_xu_agb<br>xu_agb"]):::uptodate
x55cd1a25824d6c45(["xu_agb"]):::uptodate --> xf0221f83c716da5d(["sites_xu_agb<br>xu_agb"]):::uptodate
x67bb6dac1619a9fe(["agb_map_az_png<br>az png"]):::uptodate --> xb72891f20a5b8df1(["report"]):::outdated
xfcb3304ed0ccad58(["agb_map_ca_png<br>ca png"]):::outdated --> xb72891f20a5b8df1(["report"]):::outdated
x8fdb741d59a9d9f7(["agb_map_pima_png<br>pima png"]):::outdated --> xb72891f20a5b8df1(["report"]):::outdated
x6ded25abd13901dd(["agb_map_srer_png<br>srer png"]):::outdated --> xb72891f20a5b8df1(["report"]):::outdated
xcb744cc5b3c011de(["median_map_az_png<br>az png"]):::uptodate --> xb72891f20a5b8df1(["report"]):::outdated
xbccfd088a963c01b(["median_map_ca_png<br>ca png"]):::uptodate --> xb72891f20a5b8df1(["report"]):::outdated
x05a99b56c623bdbf(["median_map_pima_png<br>pima png"]):::outdated --> xb72891f20a5b8df1(["report"]):::outdated
x599ce45254dfcf12(["median_map_srer_png<br>srer png"]):::outdated --> xb72891f20a5b8df1(["report"]):::outdated
x9db81f788ddc3e77(["ridge_az_png<br>png"]):::uptodate --> xb72891f20a5b8df1(["report"]):::outdated
x494a8da183e6456e(["ridge_ca_png<br>png"]):::uptodate --> xb72891f20a5b8df1(["report"]):::outdated
x9026d3689638e855(["ridge_pima_png<br>png"]):::outdated --> xb72891f20a5b8df1(["report"]):::outdated
x8fb024c3aab62b0a(["ridge_srer_png<br>png"]):::outdated --> xb72891f20a5b8df1(["report"]):::outdated
x2d046568113c38ec["scatter_plots"]:::outdated --> xb72891f20a5b8df1(["report"]):::outdated
x5d46a426d10236f5(["sd_map_az_png<br>az png"]):::uptodate --> xb72891f20a5b8df1(["report"]):::outdated
x6f9571f76fb08c01(["sd_map_ca_png<br>ca png"]):::uptodate --> xb72891f20a5b8df1(["report"]):::outdated
x65d586cb69f78e35(["sd_map_pima_png<br>pima png"]):::outdated --> xb72891f20a5b8df1(["report"]):::outdated
xa136827e6574e960(["sd_map_srer_png<br>srer png"]):::outdated --> xb72891f20a5b8df1(["report"]):::outdated
x1df925585a964a4f["summary_stats"]:::outdated --> xb72891f20a5b8df1(["report"]):::outdated
x0c544fc75086be79(["agb_stack"]):::uptodate --> x693953566a2ca630(["agb_df_az"]):::uptodate
xd175b91b13bd123d(["az"]):::uptodate --> x693953566a2ca630(["agb_df_az"]):::uptodate
x2d046568113c38ec["scatter_plots"]:::outdated --> x1cedc3c7f523e7cc(["zip_scatter_plots"]):::outdated
x693953566a2ca630(["agb_df_az"]):::uptodate --> xfe340e9d3143cfe1(["plot_comparisons"]):::outdated
xf66cf75dc2e3304d(["conus"]):::uptodate --> xf99622c5fc8ef45a(["ltgnn_agb"]):::uptodate
x20b6251b56892c2a(["esa_agb"]):::uptodate --> xf99622c5fc8ef45a(["ltgnn_agb"]):::uptodate
x00f89745e3b925a1(["ltgnn_files"]):::uptodate --> xf99622c5fc8ef45a(["ltgnn_agb"]):::uptodate
x0c544fc75086be79(["agb_stack"]):::uptodate --> x65d586cb69f78e35(["sd_map_pima_png<br>pima png"]):::outdated
xc7806e6395dc77f0(["pima"]):::uptodate --> x65d586cb69f78e35(["sd_map_pima_png<br>pima png"]):::outdated
x0c544fc75086be79(["agb_stack"]):::uptodate --> xc7806e6395dc77f0(["pima"]):::uptodate
x7df2044a2dc501ea(["pima_dir"]):::uptodate --> xc7806e6395dc77f0(["pima"]):::uptodate
xc11069275cfeb620(["readme"]):::dispatched --> xc11069275cfeb620(["readme"]):::dispatched
end
classDef uptodate stroke:#000000,color:#ffffff,fill:#354823;
classDef outdated stroke:#000000,color:#000000,fill:#78B7C5;
classDef dispatched stroke:#000000,color:#000000,fill:#DC863B;
classDef none stroke:#000000,color:#000000,fill:#94a4ac;
linkStyle 0 stroke-width:0px;
linkStyle 1 stroke-width:0px;
linkStyle 2 stroke-width:0px;
linkStyle 3 stroke-width:0px;
linkStyle 148 stroke-width:0px;
fs::dir_tree(recurse = 1).
├── LICENSE
├── R
│ ├── calc_summary.R
│ ├── crop_srer.R
│ ├── extract_agb_site.R
│ ├── get_esa_crs.R
│ ├── get_site_locs.R
│ ├── make_agb_stack.R
│ ├── make_az_sf.R
│ ├── make_ca_az_sf.R
│ ├── make_shape_list.R
│ ├── pivot_sites.R
│ ├── plot_agb_map.R
│ ├── plot_agb_ridges.R
│ ├── plot_median_map.R
│ ├── plot_scatter.R
│ ├── plot_sd_map.R
│ ├── project_crop_esa.R
│ ├── read_clean_chopping.R
│ ├── read_clean_esa.R
│ ├── read_clean_gedi.R
│ ├── read_clean_liu.R
│ ├── read_clean_lt_gnn.R
│ ├── read_clean_menlove.R
│ ├── read_clean_rap.R
│ ├── read_clean_xu.R
│ ├── trim_image.R
│ └── zip_plots.R
├── README.md
├── README.qmd
├── README.rmarkdown
├── SW_Biomass.Rproj
├── _targets
│ ├── meta
│ ├── objects
│ ├── scratch
│ └── user
├── _targets.R
├── _targets_packages.R
├── data
│ ├── rasters
│ └── shapefiles
├── docs
│ ├── fig
│ ├── report.html
│ ├── report.qmd
│ ├── report_files
│ ├── site_data.csv
│ └── xu_trend.png
├── notes
│ ├── NEON_data.png
│ ├── ameriflux.R
│ ├── estimate_file_sizes.R
│ ├── improve ridges.R
│ ├── kernel_estimation.R
│ ├── mosaic_tiles.R
│ ├── neon_usfs_data.R
│ ├── plot_doy_trends.R
│ ├── pointdensity_plots.R
│ ├── scaled_sd.R
│ ├── srer_map.R
│ └── violin_plots.R
├── renv
│ ├── activate.R
│ ├── library
│ ├── settings.json
│ └── staging
├── renv.lock
└── sync_data.R
R/contains functions used in thetargetspipeline._targetsis generated bytargets::tar_make()and only the metadata of the targets pipeline is on GitHub._targets.Rdefines atargetsworkflowdata/rastersis where data files for each of the data products should be placed in order to reproduce this workflow. More detailed instructions on what files are there TBD.data/shapefilescontains shapefiles.docs/contains output figures and reports that are rendered.notes/contains scripts with “sketches” about how to do thingsrenvandrenv.lockare necessary for therenvpackage to work (see above)_targets_packages.Ris generated bytargets::tar_renv()and allowrenvto capture pipeline dependenciessync_data.Rhas some example code for figuring out which raw data files are actually currently used by the pipeline and syncing them to remote servers