Fix API refs.

Emad-COMBINE-lab · Jun 6, 2024 · 1a264f9 · 1a264f9
1 parent b0e4794
commit 1a264f9
Show file tree

Hide file tree

Showing 94 changed files with 6,682 additions and 2,392 deletions.
diff --git a/docs/_build/doctrees/benchmarking.doctree b/docs/_build/doctrees/benchmarking.doctree
diff --git a/docs/_build/doctrees/causal_gan_cfg.doctree b/docs/_build/doctrees/causal_gan_cfg.doctree
diff --git a/docs/_build/doctrees/citation.doctree b/docs/_build/doctrees/citation.doctree
diff --git a/docs/_build/doctrees/custom_parser.doctree b/docs/_build/doctrees/custom_parser.doctree
diff --git a/docs/_build/doctrees/docker.doctree b/docs/_build/doctrees/docker.doctree
diff --git a/docs/_build/doctrees/environment.pickle b/docs/_build/doctrees/environment.pickle
diff --git a/docs/_build/doctrees/factory.doctree b/docs/_build/doctrees/factory.doctree
diff --git a/docs/_build/doctrees/gans.doctree b/docs/_build/doctrees/gans.doctree
diff --git a/docs/_build/doctrees/index.doctree b/docs/_build/doctrees/index.doctree
diff --git a/docs/_build/doctrees/installation.doctree b/docs/_build/doctrees/installation.doctree
diff --git a/docs/_build/doctrees/layers.doctree b/docs/_build/doctrees/layers.doctree
diff --git a/docs/_build/doctrees/license.doctree b/docs/_build/doctrees/license.doctree
diff --git a/docs/_build/doctrees/local_installation.doctree b/docs/_build/doctrees/local_installation.doctree
diff --git a/docs/_build/doctrees/main.doctree b/docs/_build/doctrees/main.doctree
diff --git a/docs/_build/doctrees/modules.doctree b/docs/_build/doctrees/modules.doctree
diff --git a/docs/_build/doctrees/networks.doctree b/docs/_build/doctrees/networks.doctree
diff --git a/docs/_build/doctrees/preprocessing.doctree b/docs/_build/doctrees/preprocessing.doctree
diff --git a/docs/_build/doctrees/sc_dataset.doctree b/docs/_build/doctrees/sc_dataset.doctree
diff --git a/docs/_build/doctrees/singularity.doctree b/docs/_build/doctrees/singularity.doctree
diff --git a/docs/_build/doctrees/tfrecord_loader.doctree b/docs/_build/doctrees/tfrecord_loader.doctree
diff --git a/docs/_build/doctrees/tree.doctree b/docs/_build/doctrees/tree.doctree
diff --git a/docs/_build/doctrees/tutorial.doctree b/docs/_build/doctrees/tutorial.doctree
diff --git a/docs/_build/html/.buildinfo b/docs/_build/html/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: 8c1cb4b216f80552417649c1f47f053b
+config: b272a32d1c6bdd06bb404085dcf9896d
 tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/docs/_build/html/_modules/factory.html b/docs/_build/html/_modules/factory.html
diff --git a/docs/_build/html/_modules/gans/causal_gan.html b/docs/_build/html/_modules/gans/causal_gan.html
diff --git a/docs/_build/html/_modules/gans/conditional_gan.html b/docs/_build/html/_modules/gans/conditional_gan.html
diff --git a/docs/_build/html/_modules/gans/conditional_gan_cat.html b/docs/_build/html/_modules/gans/conditional_gan_cat.html
diff --git a/docs/_build/html/_modules/gans/conditional_gan_proj.html b/docs/_build/html/_modules/gans/conditional_gan_proj.html
diff --git a/docs/_build/html/_modules/gans/gan.html b/docs/_build/html/_modules/gans/gan.html
diff --git a/docs/_build/html/_modules/index.html b/docs/_build/html/_modules/index.html
@@ -1,9 +1,8 @@
 
-
 <!DOCTYPE html>
 
 
-<html lang="en" data-content_root="" data-theme="light">
+<html lang="en" data-content_root="../" data-theme="light">
 
   <head>
     <meta charset="utf-8" />
@@ -18,31 +17,31 @@
   </script>
 
   <!-- Loaded before other Sphinx assets -->
-  <link href="../_static/styles/theme.css?digest=8d27b9dea8ad943066ae" rel="stylesheet" />
-<link href="../_static/styles/bootstrap.css?digest=8d27b9dea8ad943066ae" rel="stylesheet" />
-<link href="../_static/styles/pydata-sphinx-theme.css?digest=8d27b9dea8ad943066ae" rel="stylesheet" />
+  <link href="../_static/styles/theme.css?digest=3ee479438cf8b5e0d341" rel="stylesheet" />
+<link href="../_static/styles/bootstrap.css?digest=3ee479438cf8b5e0d341" rel="stylesheet" />
+<link href="../_static/styles/pydata-sphinx-theme.css?digest=3ee479438cf8b5e0d341" rel="stylesheet" />
 
 
-  <link href="../_static/vendor/fontawesome/6.5.1/css/all.min.css?digest=8d27b9dea8ad943066ae" rel="stylesheet" />
-  <link rel="preload" as="font" type="font/woff2" crossorigin href="../_static/vendor/fontawesome/6.5.1/webfonts/fa-solid-900.woff2" />
-<link rel="preload" as="font" type="font/woff2" crossorigin href="../_static/vendor/fontawesome/6.5.1/webfonts/fa-brands-400.woff2" />
-<link rel="preload" as="font" type="font/woff2" crossorigin href="../_static/vendor/fontawesome/6.5.1/webfonts/fa-regular-400.woff2" />
+  <link href="../_static/vendor/fontawesome/6.5.2/css/all.min.css?digest=3ee479438cf8b5e0d341" rel="stylesheet" />
+  <link rel="preload" as="font" type="font/woff2" crossorigin href="../_static/vendor/fontawesome/6.5.2/webfonts/fa-solid-900.woff2" />
+<link rel="preload" as="font" type="font/woff2" crossorigin href="../_static/vendor/fontawesome/6.5.2/webfonts/fa-brands-400.woff2" />
+<link rel="preload" as="font" type="font/woff2" crossorigin href="../_static/vendor/fontawesome/6.5.2/webfonts/fa-regular-400.woff2" />
 
-    <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/styles/sphinx-book-theme.css" />
-    <link rel="stylesheet" type="text/css" href="../_static/copybutton.css" />
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=a746c00c" />
+    <link rel="stylesheet" type="text/css" href="../_static/styles/sphinx-book-theme.css?v=384b581d" />
+    <link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
 
   <!-- Pre-loaded scripts that we'll load fully later -->
-  <link rel="preload" as="script" href="../_static/scripts/bootstrap.js?digest=8d27b9dea8ad943066ae" />
-<link rel="preload" as="script" href="../_static/scripts/pydata-sphinx-theme.js?digest=8d27b9dea8ad943066ae" />
-  <script src="../_static/vendor/fontawesome/6.5.1/js/all.min.js?digest=8d27b9dea8ad943066ae"></script>
-
-    <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js"></script>
-    <script src="../_static/doctools.js"></script>
-    <script src="../_static/sphinx_highlight.js"></script>
-    <script src="../_static/clipboard.min.js"></script>
-    <script src="../_static/copybutton.js"></script>
-    <script src="../_static/scripts/sphinx-book-theme.js"></script>
+  <link rel="preload" as="script" href="../_static/scripts/bootstrap.js?digest=3ee479438cf8b5e0d341" />
+<link rel="preload" as="script" href="../_static/scripts/pydata-sphinx-theme.js?digest=3ee479438cf8b5e0d341" />
+  <script src="../_static/vendor/fontawesome/6.5.2/js/all.min.js?digest=3ee479438cf8b5e0d341"></script>
+
+    <script src="../_static/documentation_options.js?v=a681ed88"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
+    <script src="../_static/clipboard.min.js?v=a7894cd8"></script>
+    <script src="../_static/copybutton.js?v=f281be69"></script>
+    <script src="../_static/scripts/sphinx-book-theme.js?v=efea14e4"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = '_modules/index';</script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
@@ -55,27 +54,23 @@
 
 
 
-  <a id="pst-skip-link" class="skip-link" href="#main-content">Skip to main content</a>
+  <div id="pst-skip-link" class="skip-link d-print-none"><a href="#main-content">Skip to main content</a></div>
 
   <div id="pst-scroll-pixel-helper"></div>
 
   <button type="button" class="btn rounded-pill" id="pst-back-to-top">
-    <i class="fa-solid fa-arrow-up"></i>
-    Back to top
-  </button>
+    <i class="fa-solid fa-arrow-up"></i>Back to top</button>
 
 
   <input type="checkbox"
           class="sidebar-toggle"
-          name="__primary"
-          id="__primary"/>
-  <label class="overlay overlay-primary" for="__primary"></label>
+          id="pst-primary-sidebar-checkbox"/>
+  <label class="overlay overlay-primary" for="pst-primary-sidebar-checkbox"></label>
 
   <input type="checkbox"
           class="sidebar-toggle"
-          name="__secondary"
-          id="__secondary"/>
-  <label class="overlay overlay-secondary" for="__secondary"></label>
+          id="pst-secondary-sidebar-checkbox"/>
+  <label class="overlay overlay-secondary" for="pst-secondary-sidebar-checkbox"></label>
 
   <div class="search-button__wrapper">
     <div class="search-button__overlay"></div>
@@ -97,8 +92,13 @@
   <span class="search-button__kbd-shortcut"><kbd class="kbd-shortcut__modifier">Ctrl</kbd>+<kbd>K</kbd></span>
 </form></div>
   </div>
+
+  <div class="pst-async-banner-revealer d-none">
+  <aside id="bd-header-version-warning" class="d-none d-print-none" aria-label="Version warning"></aside>
+</div>
+
 
-    <header class="bd-header navbar navbar-expand-lg bd-navbar">
+    <header class="bd-header navbar navbar-expand-lg bd-navbar d-print-none">
     </header>
 
 
@@ -210,7 +210,7 @@
 <li class="toctree-l1"><a class="reference internal" href="../license.html">License</a></li>
 </ul>
 <ul class="nav bd-sidenav">
-<li class="toctree-l1 has-children"><a class="reference internal" href="../modules.html">API References</a><input class="toctree-checkbox" id="toctree-checkbox-1" name="toctree-checkbox-1" type="checkbox"/><label class="toctree-toggle" for="toctree-checkbox-1"><i class="fa-solid fa-chevron-down"></i></label><ul>
+<li class="toctree-l1 has-children"><a class="reference internal" href="../modules.html">API References</a><ul>
 <li class="toctree-l2"><a class="reference internal" href="../factory.html">factory module</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../gans.html">gans package</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../layers.html">layers package</a></li>
@@ -220,8 +220,8 @@
 <li class="toctree-l2"><a class="reference internal" href="../preprocessing.html">preprocessing package</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../sc_dataset.html">sc_dataset module</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../tfrecord_loader.html">tfrecord_loader module</a></li>
-</ul>
-</li>
+</ul><details><summary><span class="toctree-toggle" role="presentation"><i class="fa-solid fa-chevron-down"></i></span></summary>
+</details></li>
 </ul>
 
     </div>
@@ -237,7 +237,7 @@
 
       </div>
 
-      <main id="main-content" class="bd-main">
+      <main id="main-content" class="bd-main" role="main">
 
 
 
@@ -246,7 +246,7 @@
           <div class="bd-content">
             <div class="bd-article-container">
 
-              <div class="bd-header-article">
+              <div class="bd-header-article d-print-none">
 <div class="header-article-items header-article__inner">
 
     <div class="header-article-items__start">
@@ -374,6 +374,23 @@ <h1></h1>
   <h1>All modules for which code is available</h1>
 <ul><li><a href="_abc.html">_abc</a></li>
 <li><a href="custom_parser.html">custom_parser</a></li>
+<li><a href="factory.html">factory</a></li>
+<li><a href="gans/causal_gan.html">gans.causal_gan</a></li>
+<li><a href="gans/conditional_gan.html">gans.conditional_gan</a></li>
+<li><a href="gans/conditional_gan_cat.html">gans.conditional_gan_cat</a></li>
+<li><a href="gans/conditional_gan_proj.html">gans.conditional_gan_proj</a></li>
+<li><a href="gans/gan.html">gans.gan</a></li>
+<li><a href="layers/cbn.html">layers.cbn</a></li>
+<li><a href="layers/lsn.html">layers.lsn</a></li>
+<li><a href="layers/masked_linear.html">layers.masked_linear</a></li>
+<li><a href="networks/critic.html">networks.critic</a></li>
+<li><a href="networks/generator.html">networks.generator</a></li>
+<li><a href="networks/labeler.html">networks.labeler</a></li>
+<li><a href="networks/masked_causal_generator.html">networks.masked_causal_generator</a></li>
+<li><a href="preprocessing/grn_creation.html">preprocessing.grn_creation</a></li>
+<li><a href="preprocessing/preprocess.html">preprocessing.preprocess</a></li>
+<li><a href="sc_dataset.html">sc_dataset</a></li>
+<li><a href="tfrecord_loader.html">tfrecord_loader</a></li>
 </ul>
 
                 </article>
@@ -383,7 +400,7 @@ <h1>All modules for which code is available</h1>
 
 
 
-                <footer class="prev-next-footer">
+                <footer class="prev-next-footer d-print-none">
 
 <div class="prev-next-area">
 </div>
@@ -393,8 +410,6 @@ <h1>All modules for which code is available</h1>
 
 
 
-                <div class="bd-sidebar-secondary bd-toc"></div>
-
 
           </div>
           <footer class="bd-footer-content">
@@ -438,8 +453,8 @@ <h1>All modules for which code is available</h1>
   </div>
 
   <!-- Scripts loaded after <body> so the DOM is not blocked -->
-  <script src="../_static/scripts/bootstrap.js?digest=8d27b9dea8ad943066ae"></script>
-<script src="../_static/scripts/pydata-sphinx-theme.js?digest=8d27b9dea8ad943066ae"></script>
+  <script src="../_static/scripts/bootstrap.js?digest=3ee479438cf8b5e0d341"></script>
+<script src="../_static/scripts/pydata-sphinx-theme.js?digest=3ee479438cf8b5e0d341"></script>
 
   <footer class="bd-footer">
   </footer>