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Update dbSNP script - fix MAF #1052

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dglemos wants to merge 2 commits into Ensembl:main from dglemos:fix/dbsnp_maf

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dglemos commented Nov 7, 2023 •

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Update the script load_dbsnp.pl

Fix MAF for SNVs
Skip indels: JSON has problems with the allele representation; it is better to skip indels for now otherwise the script is going to insert incorrect values into the db

More details: ENSVAR-6086

To test the code need to run the dbSNP pipeline.


          Fix MAF for snv

59e87e8

dglemos requested review from olaaustine and jamie-m-a

November 7, 2023 11:26

dglemos assigned jamie-m-a and olaaustine


          Check length of minor allele

d171998

dglemos changed the base branch from postreleasefix/112 to main

September 10, 2024 12:27

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