Red: an intelligent, rapid, accurate tool for detecting repeats de-novo on the genomic scale.
Requirement: GNU gcc8.2 or higher. Please change the name (CXX) of the compiler in the Makefile or pass the CXX to make as shown below.
Compiling the source code
The following command makes the required directories:
make bin
The following command makes the binary that is located under the ``bin'' directory:
make
Alternatively:
make CXX=g++-8
To find the binary:
cd ../bin
Please cite the following paper:
Girgis, H.Z. (2015) Red: an intelligent, rapid, accurate tool for detecting repeats de-novo on the genomic scale. BMC Bioinformatics, 16, 227.
This fork adds option -frm 3 to produce 1-based inclusive coordinates for Ensembl, as needed in https://github.com/Ensembl/plant-scripts