static content creation for all the 114 species #145

Dishalodha · 2024-11-18T11:50:05Z

No description provided.

Dishalodha · 2024-12-03T16:43:59Z

Barley information is repeated, need to find a better way to display that and also the annotation source says its from INSDC, I need to double check if thats true.

JAlvarezJarreta · 2025-01-03T17:23:49Z

plants/species/Hordeum_vulgare/Hordeum_vulgare_hid055_annotation.md

+
+ensembl-plants displaying genes imported from IPK-Gatersleben entry linked to the assembly with accession [GCA\_951341855.1](http://www.ebi.ac.uk/ena/data/view/GCA_951341855.1).
+
+Genomic annotation was deposited along with initial assembly submission by ["Martin Luther University Halle-Wittenberg"](URL_GOES_HERE).


Suggested change

Genomic annotation was deposited along with initial assembly submission by ["Martin Luther University Halle-Wittenberg"](URL_GOES_HERE).

Genomic annotation was deposited along with initial assembly submission by ["Martin Luther University Halle-Wittenberg"](https://www.uni-halle.de/?lang=en).

JAlvarezJarreta · 2025-01-03T17:27:19Z

plants/species/Hordeum_vulgare/Hordeum_vulgare_hid055_about.md

+Barley, a member of the grass family, is a major cereal grain grown in 
+temperate climates globally. It was one of the first cultivated 
+grains; it was domesticated in the Fertile Crescent around 9000 BC, 
+giving it nonshattering spikelets and making it much easier to 
+harvest. Its use then spread throughout Eurasia by 2000 BC. Barley 
+prefers relatively low temperatures and well-drained soil to grow. It 
+is relatively tolerant of drought and soil salinity but is less 
+winter-hardy than wheat or rye.


This is the only about.md file with more description than the rest. Is it expected?

JAlvarezJarreta · 2025-01-03T17:28:01Z

plants/species/Hordeum_vulgare/Hordeum_vulgare_hid101_annotation.md

+
+ensembl-plants displaying genes imported from IPK-Gatersleben entry linked to the assembly with accession [GCA\_951341475.1](http://www.ebi.ac.uk/ena/data/view/GCA_951341475.1).
+
+Genomic annotation was deposited along with initial assembly submission by ["Martin Luther University Halle-Wittenberg"](URL_GOES_HERE).


Suggested change

Genomic annotation was deposited along with initial assembly submission by ["Martin Luther University Halle-Wittenberg"](URL_GOES_HERE).

Genomic annotation was deposited along with initial assembly submission by ["Martin Luther University Halle-Wittenberg"](https://www.uni-halle.de/?lang=en).

JAlvarezJarreta · 2025-01-03T17:28:23Z

plants/species/Hordeum_vulgare/Hordeum_vulgare_hid249_annotation.md

+
+ensembl-plants displaying genes imported from IPK-Gatersleben entry linked to the assembly with accession [GCA\_951341515.1](http://www.ebi.ac.uk/ena/data/view/GCA_951341515.1).
+
+Genomic annotation was deposited along with initial assembly submission by ["Martin Luther University Halle-Wittenberg"](URL_GOES_HERE).


Suggested change

Genomic annotation was deposited along with initial assembly submission by ["Martin Luther University Halle-Wittenberg"](URL_GOES_HERE).

Genomic annotation was deposited along with initial assembly submission by ["Martin Luther University Halle-Wittenberg"](https://www.uni-halle.de/?lang=en).

JAlvarezJarreta · 2025-01-03T17:28:41Z

plants/species/Hordeum_vulgare/Hordeum_vulgare_hid357_annotation.md

+
+ensembl-plants displaying genes imported from IPK-Gatersleben entry linked to the assembly with accession [GCA\_951341455.1](http://www.ebi.ac.uk/ena/data/view/GCA_951341455.1).
+
+Genomic annotation was deposited along with initial assembly submission by ["Martin Luther University Halle-Wittenberg"](URL_GOES_HERE).


Suggested change

Genomic annotation was deposited along with initial assembly submission by ["Martin Luther University Halle-Wittenberg"](URL_GOES_HERE).

Genomic annotation was deposited along with initial assembly submission by ["Martin Luther University Halle-Wittenberg"](https://www.uni-halle.de/?lang=en).

JAlvarezJarreta · 2025-01-03T17:29:00Z

plants/species/Hordeum_vulgare/Hordeum_vulgare_hid380_annotation.md

+
+ensembl-plants displaying genes imported from IPK-Gatersleben entry linked to the assembly with accession [GCA\_951341805.1](http://www.ebi.ac.uk/ena/data/view/GCA_951341805.1).
+
+Genomic annotation was deposited along with initial assembly submission by ["Martin Luther University Halle-Wittenberg"](URL_GOES_HERE).


Suggested change

Genomic annotation was deposited along with initial assembly submission by ["Martin Luther University Halle-Wittenberg"](URL_GOES_HERE).

Genomic annotation was deposited along with initial assembly submission by ["Martin Luther University Halle-Wittenberg"](https://www.uni-halle.de/?lang=en).

JAlvarezJarreta · 2025-01-03T17:32:20Z

plants/species/Vitis/Vitis_vinifera/Vitis_vinifera_annotation.md

+The annotation presented is derived from annotation submitted to
+[INSDC](http://www.insdc.org) with the assembly accession [GCA\_030704535.1](http://www.ebi.ac.uk/ena/data/view/GCA_030704535.1).
+
+ensembl-plants displaying genes imported from [NCBI RefSeq](https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Vitis_vinifera/GCF_030704535.1-RS_2023_09.html) annotation release vGCF_030704535.1-RS_2023_09.html.


Suggested change

ensembl-plants displaying genes imported from [NCBI RefSeq](https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Vitis_vinifera/GCF_030704535.1-RS_2023_09.html) annotation release vGCF_030704535.1-RS_2023_09.html.

ensembl-plants displaying genes imported from [NCBI RefSeq](https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Vitis_vinifera/GCF_030704535.1-RS_2023_09.html) annotation release GCF_030704535.1-RS_2023_09.

JAlvarezJarreta · 2025-01-03T17:33:37Z

plants/species/Vitis/Vitis_vinifera/Vitis_vinifera_assembly.md

+**Assembly**
+--------
+
+The assembly presented here has been imported from [INSDC](http://www.insdc.org) and is linked to the assembly accession [[GCA\_030704535.1](http://www.ebi.ac.uk/ena/data/view/GCA_030704535.1)].


Suggested change

The assembly presented here has been imported from [INSDC](http://www.insdc.org) and is linked to the assembly accession [[GCA\_030704535.1](http://www.ebi.ac.uk/ena/data/view/GCA_030704535.1)].

The assembly presented here has been imported from [INSDC](http://www.insdc.org) and is linked to the assembly accession [[GCA\_030704535.1](https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_030704535.1/)].

JAlvarezJarreta · 2025-01-03T17:34:48Z

plants/species/Sphenostylis/Sphenostylis_stenocarpa/Sphenostylis_stenocarpa_annotation.md

+
+ensembl-plants displaying genes imported from GenBank entry linked to the assembly with accession [GCA\_963425845.1](http://www.ebi.ac.uk/ena/data/view/GCA_963425845.1).
+
+Genomic annotation was deposited along with initial assembly submission by ["International Livestock Research Institute"](URL_GOES_HERE).


Suggested change

Genomic annotation was deposited along with initial assembly submission by ["International Livestock Research Institute"](URL_GOES_HERE).

Genomic annotation was deposited along with initial assembly submission by ["International Livestock Research Institute"](https://www.ilri.org).

JAlvarezJarreta · 2025-01-03T17:37:08Z

plants/species/Sphenostylis/Sphenostylis_stenocarpa/Sphenostylis_stenocarpa_about.md

+Picture credit: [LICENSE TYPE]() via Wikimedia Commons [(Image source)]()
+


Suggested change

Picture credit: [LICENSE TYPE]() via Wikimedia Commons [(Image source)]()

Picture credit: [LICENSE TYPE]() via Wikimedia Commons [(Image source)]()

Has someone contacted the provider already to get an image?

static content creation for all the 114 species from wiki

8f2167d

Dishalodha marked this pull request as draft November 18, 2024 11:50

Dishalodha added 3 commits December 4, 2024 13:34

update the annotation to community

00ed5e7

remove the genereak about section

ee7b936

move the files to one dir

c2e3c85

Dishalodha changed the title ~~static content creation for all the 114 species from wiki~~ static content creation for all the 114 species Dec 17, 2024

Dishalodha marked this pull request as ready for review December 17, 2024 16:05

JAlvarezJarreta suggested changes Jan 3, 2025

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static content creation for all the 114 species #145

static content creation for all the 114 species #145

Dishalodha commented Nov 18, 2024

Dishalodha commented Dec 3, 2024

JAlvarezJarreta Jan 3, 2025

JAlvarezJarreta Jan 3, 2025

JAlvarezJarreta Jan 3, 2025

JAlvarezJarreta Jan 3, 2025

JAlvarezJarreta Jan 3, 2025

JAlvarezJarreta Jan 3, 2025

JAlvarezJarreta Jan 3, 2025

JAlvarezJarreta Jan 3, 2025

JAlvarezJarreta Jan 3, 2025

JAlvarezJarreta Jan 3, 2025


		ensembl-plants displaying genes imported from IPK-Gatersleben entry linked to the assembly with accession [GCA\_951341855.1](http://www.ebi.ac.uk/ena/data/view/GCA_951341855.1).

		Genomic annotation was deposited along with initial assembly submission by ["Martin Luther University Halle-Wittenberg"](URL_GOES_HERE).

	The assembly presented here has been imported from [INSDC](http://www.insdc.org) and is linked to the assembly accession [[GCA\_030704535.1](http://www.ebi.ac.uk/ena/data/view/GCA_030704535.1)].
	The assembly presented here has been imported from [INSDC](http://www.insdc.org) and is linked to the assembly accession [[GCA\_030704535.1](https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_030704535.1/)].

		Picture credit: [LICENSE TYPE]() via Wikimedia Commons [(Image source)]()

static content creation for all the 114 species #145

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static content creation for all the 114 species #145

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Dishalodha commented Nov 18, 2024

Dishalodha commented Dec 3, 2024

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