Modelling the Interplay between Responsive Individual Vaccination Decisions and the Spread of SARS-CoV-2

This repository holds the source code to reproduce the analysis of our model of SARS-CoV-2 transmission dynamics and vaccination behaviours in the state of Georgia in 2021/2022.

These models are written and executed in the R statistical software language. To run these files, it is necessary to first install our epidemic modeling software, EpiModel, and our extension package specifically for modeling SARS-CoV-2 transmission dynamics, EpiModelCOVID. The branch of the EpiModelCOVID repository associated with this research project is Vax-Decisions.

This installation is accomplished with the renv package in R. First install renv (if you do not already have it installed) and run:

renv::init()

in your project directory. Select the option to restore the package set set from the renv.lock file.