remove MolecularConsequences app

genomics-apps/README.md

@@ -12,7 +12,7 @@ Uses:
 ## Get Variants
 https://getvariants.streamlit.app/
 
-Enter patient and gene, and get back all overlapping simple variants, structural variants, and genotypes. 
+Enter patient and gene, and get back all overlapping simple variants, structural variants, and genotypes.
 
 Uses:
 * get-feature-coordinates
@@ -38,21 +38,20 @@ Uses:
 * find-subject-haplotypes
 * find-subject-tx-implications
 
-## Get Molecular Consequences
-https://getmolecularconsequences.streamlit.app/
+## Mendelian Screening
+https://mendelianscreening.streamlit.app/
 
-Enter patient and gene, and get back all overlapping simple variants, structural variants, and genotypes. Check the compute additional annotations button to calculate annotations for variants that were previously unannotated, concatenate SNVs that are in cis into MNVs, and annotate those MNVs.
+Enter patient and gene(s), and get back all variants, annotated with diagnostic implications, predicted molecular consequences, and population
+allele frequencies. Patient's problem list is flagged with conditions potentially having an underlying genetic basis.
 
 Uses:
-* get-feature-coordinates
+* FHIR search (to retrieve conditions, medications, allergies)
 * find-subject-variants
-* find-subject-structural-intersecting-variants
-* find-subject-haplotypes
+* find-subject-molecular-consequences
+* find-subject-dx-implications
 
 ## Get Polygenic Score
-https://polygenicscore.streamlit.app/
-
-video: https://vimeo.com/930060292
+https://polygenicscore.streamlit.app/ (and video: https://vimeo.com/930060292)
 
 This proof-of-concept app demonstrates the computation of a polygenic score, using FHIR Genomics Operations to access a person's entire genome.
 Select patient and polygenic model in the sidebar, optionally adjust standard deviation threshold, and click 'Run'.