update topologicaly copy filters #81
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| # Continuous integration testing for ChRIS Plugin. | |
| # https://github.com/FNNDSC/python-chrisapp-template/wiki/Continuous-Integration | |
| # | |
| # - on push and PR: run pytest | |
| # - on push to main: build and push container images as ":latest" | |
| # - on push to semver tag: build and push container image with tag and | |
| # upload plugin description to https://chrisstore.co | |
| name: build | |
| on: | |
| push: | |
| branches: [ main ] | |
| tags: | |
| - "v?[0-9]+.[0-9]+.[0-9]+*" | |
| pull_request: | |
| branches: [ main ] | |
| jobs: | |
| test: | |
| name: Unit tests | |
| if: false # delete this line to enable automatic testing | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: docker/setup-buildx-action@v2 | |
| - name: Cache Docker layers | |
| uses: actions/cache@v2 | |
| with: | |
| path: /tmp/.buildx-cache | |
| key: ${{ runner.os }}-buildx-${{ github.sha }} | |
| restore-keys: | | |
| ${{ runner.os }}-buildx- | |
| - name: Build | |
| uses: docker/build-push-action@v3 | |
| with: | |
| build-args: extras_require=dev | |
| context: . | |
| load: true | |
| push: false | |
| tags: "localhost/local/app:dev" | |
| cache-from: type=local,src=/tmp/.buildx-cache | |
| cache-to: type=local,dest=/tmp/.buildx-cache | |
| - name: Run pytest | |
| run: | | |
| docker run -v "$GITHUB_WORKSPACE:/app:ro" -w /app localhost/local/app:dev \ | |
| pytest -o cache_dir=/tmp/pytest | |
| build: | |
| name: Build | |
| if: github.event_name == 'push' || github.event_name == 'release' | |
| # needs: [ test ] # uncomment to require passing tests | |
| runs-on: ubuntu-22.04 | |
| # A local registry helps us reuse the built image between steps | |
| services: | |
| registry: | |
| image: registry:2 | |
| ports: | |
| - 5000:5000 | |
| steps: | |
| - name: Get git tag | |
| id: git_info | |
| if: startsWith(github.ref, 'refs/tags/') | |
| run: echo "::set-output name=tag::${GITHUB_REF##*/}" | |
| - name: Get project info | |
| id: determine | |
| env: | |
| git_tag: ${{ steps.git_info.outputs.tag }} | |
| run: | | |
| repo="${GITHUB_REPOSITORY,,}" # to lower case | |
| # if build triggered by tag, use tag name | |
| tag="${git_tag:-latest}" | |
| # if tag is a version number prefixed by 'v', remove the 'v' | |
| if [[ "$tag" =~ ^v[0-9].* ]]; then | |
| tag="${tag:1}" | |
| fi | |
| dock_image=$repo:$tag | |
| echo $dock_image | |
| echo "::set-output name=dock_image::$dock_image" | |
| echo "::set-output name=repo::$repo" | |
| - uses: actions/checkout@v3 | |
| # QEMU is used for non-x86_64 builds | |
| - uses: docker/setup-qemu-action@v2 | |
| # buildx adds additional features to docker build | |
| - uses: docker/setup-buildx-action@v2 | |
| with: | |
| driver-opts: network=host | |
| # cache slightly improves rebuild time | |
| - name: Cache Docker layers | |
| uses: actions/cache@v2 | |
| with: | |
| path: /tmp/.buildx-cache | |
| key: ${{ runner.os }}-buildx-${{ github.sha }} | |
| restore-keys: | | |
| ${{ runner.os }}-buildx- | |
| - name: Login to DockerHub | |
| id: dockerhub_login | |
| uses: docker/login-action@v2 | |
| with: | |
| username: ${{ secrets.DOCKERHUB_USERNAME }} | |
| password: ${{ secrets.DOCKERHUB_PASSWORD }} | |
| - name: Login to GitHub Container Registry | |
| uses: docker/login-action@v2 | |
| with: | |
| registry: ghcr.io | |
| username: ${{ github.repository_owner }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Build and push | |
| uses: docker/build-push-action@v3 | |
| id: docker_build | |
| with: | |
| context: . | |
| file: ./Dockerfile | |
| tags: | | |
| localhost:5000/${{ steps.determine.outputs.dock_image }} | |
| docker.io/${{ steps.determine.outputs.dock_image }} | |
| ghcr.io/${{ steps.determine.outputs.dock_image }} | |
| # if non-x86_84 architectures are supported, add them here | |
| platforms: linux/amd64 #,linux/arm64,linux/ppc64le | |
| push: true | |
| cache-from: type=local,src=/tmp/.buildx-cache | |
| cache-to: type=local,dest=/tmp/.buildx-cache | |
| - name: Get plugin meta | |
| id: pluginmeta | |
| run: | | |
| repo=${{ steps.determine.outputs.repo }} | |
| dock_image=${{ steps.determine.outputs.dock_image }} | |
| docker run --rm localhost:5000/$dock_image chris_plugin_info > /tmp/description.json | |
| jq < /tmp/description.json # pretty print in log | |
| echo "::set-output name=title::$(jq -r '.title' < /tmp/description.json)" | |
| - name: Update DockerHub description | |
| uses: peter-evans/dockerhub-description@v2 | |
| continue-on-error: true # it is not crucial that this works | |
| with: | |
| username: ${{ secrets.DOCKERHUB_USERNAME }} | |
| password: ${{ secrets.DOCKERHUB_PASSWORD }} | |
| short-description: ${{ steps.pluginmeta.outputs.title }} | |
| readme-filepath: ./README.md | |
| repository: ${{ steps.determine.outputs.repo }} | |
| - name: Upload to ChRIS Store | |
| if: steps.git_info.outcome != 'skipped' | |
| uses: FNNDSC/chrisstore-action@master | |
| with: | |
| descriptor_file: /tmp/description.json | |
| auth: ${{ secrets.CHRIS_STORE_USER }} | |
| chris_admin_auth: ${{ secrets.CUBE_CHRISPROJECT_ORG_ADMIN_USER }} | |
| chris_admin_url: https://cube.chrisproject.org/chris-admin/api/v1/ | |
| compute_resources: host |