feat: CLIN-3610 introduce nf-core vep subworkflow #171

	name: nf-test CI
	# Run nf-test
	on:
	push:
	branches:
	- main

	pull_request:


	jobs:
	test:
	name: nf-test, NF ${{ matrix.NXF_VER }}
	runs-on: ubuntu-latest
	strategy:
	matrix:
	NXF_VER:
	- "23.10.1"
	steps:
	- name: Check out pipeline code
	uses: actions/checkout@0ad4b8fadaa221de15dcec353f45205ec38ea70b # v4
	with:
	fetch-depth: 2 # Fetch enough history to detect changed files for nf-test

	- name: Install Nextflow
	uses: nf-core/setup-nextflow@v2
	with:
	version: "${{ matrix.NXF_VER }}"

	- name: Install nf-test
	run: \|
	wget -qO- https://code.askimed.com/install/nf-test \| bash
	sudo mv nf-test /usr/local/bin/

	- name: Disk space cleanup
	uses: jlumbroso/free-disk-space@54081f138730dfa15788a46383842cd2f914a1be # v1.3.1

	- name: Run nf-test
	run: \|
	nf-test test \
	--ci \
	--changed-since="HEAD^1" \
	--tap=test.tap \
	--verbose
	# Notes:
	# - The --verbose option is required for some nf-core tests to pass. It's not
	# needed now as we only run local tests, but we mention for future use.

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