Removed errors concerning test data and emit on multiple channels

Ferlab-Ste-Justine · Jul 4, 2024 · 0f31f28 · 0f31f28
1 parent cb472b7
commit 0f31f28
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Showing 2 changed files with 6 additions and 5 deletions.
diff --git a/conf/test.config b/conf/test.config
@@ -22,7 +22,7 @@ params {
     // Input data
     // TODO nf-core: Specify the paths to your test data on nf-core/test-datasets
     // TODO nf-core: Give any required params for the test so that command line flags are not needed
-    input  = params.pipelines_testdata_base_path + 'viralrecon/samplesheet/samplesheet_test_illumina_amplicon.csv'
+    //input  = params.pipelines_testdata_base_path + 'viralrecon/samplesheet/samplesheet_test_illumina_amplicon.csv'
 
     // Genome references
     genome = 'R64-1-1'

diff --git a/subworkflows/local/utils_nfcore_postprocessing_pipeline/main.nf b/subworkflows/local/utils_nfcore_postprocessing_pipeline/main.nf
@@ -91,13 +91,14 @@ workflow PIPELINE_INITIALISATION {
             meta: tuple(it.familyId, [size: it.size, sequencingType: it.sequencingType])
             files: tuple(it.familyId, file("${it.file}*"))
         }
-        .set { sampleFile }
+        .set { sampleChannel}
         emit:
-        samplesheet = sampleFile
+        sampleFiles = sampleChannel.files
+        sampleMeta = sampleChannel.meta
         versions = ch_versions
 
-    sampleFile.meta | view{"Meta: $it"}
-    sampleFile.files | view{"files: $it"}
+    sampleMeta | view{"Meta: $it"}
+    sampleFiles | view{"files: $it"}
     //
     // Create channel from input file provided through params.input
     //