Merge pull request #55 from Ferlab-Ste-Justine/feat/CLIN-3267-bump-ve…

…rsion-to-v2.4.0-dev feat: CLIN-3267 bump version to v2.4.0-dev
Ferlab-Ste-Justine · Jan 10, 2025 · b365b13 · b365b13
2 parents 7bbc8d2 + e845ef1
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -3,7 +3,9 @@
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
-## v2.3.0-dev - [date]
+## v2.4.0-dev - [date]
+
+## v2.3.0-dev
 
 ### `Added`
 - [#44](https://github.com/Ferlab-Ste-Justine/Post-processing-Pipeline/pull/44) Make interval file optional in GenotypeGVCFs process

diff --git a/README.md b/README.md
@@ -39,7 +39,7 @@ This schema was done using [inkscape](https://inkscape.org/) with the good prati
 Here is an example nextflow command to run the pipeline:
 
 ```bash
-nextflow run -c cluster.config Ferlab-Ste-Justine/Post-processing-Pipeline -r "v2.3.0" \
+nextflow run -c cluster.config Ferlab-Ste-Justine/Post-processing-Pipeline -r "v2.4.0" \
     -params-file params.json  \
    --input samplesheet.csv \
    --outdir results/dir \

diff --git a/conf/modules.config b/conf/modules.config
@@ -63,7 +63,7 @@ process {
     }
 
     withName: EXOMISER { 
-        container = 'ferlabcrsj/exomiser:2.3.0'
+        container = 'ferlabcrsj/exomiser:2.4.0'
         publishDir = new_publish_dir([
             enabled: true,
             pattern: 'results/*{vcf.gz,vcf.gz.tbi,tsv,json,html}'

diff --git a/docs/usage.md b/docs/usage.md
@@ -54,7 +54,7 @@ These files must be correctly downloaded and specified through pipeline paramete
 The typical command for running the pipeline is as follows:
 
 ```bash
-nextflow run -c cluster.config Ferlab-Ste-Justine/Post-processing-Pipeline -r "v2.3.0" \
+nextflow run -c cluster.config Ferlab-Ste-Justine/Post-processing-Pipeline -r "v2.4.0" \
     -params-file params.json  \
    --input samplesheet.csv \
    --outdir results/dir \

diff --git a/nextflow.config b/nextflow.config
@@ -382,7 +382,7 @@ manifest {
     description     = """Variant analysis for genome and exome GVCFs"""
     mainScript      = 'main.nf'
     nextflowVersion = '!>=23.10.1'
-    version         = '2.3.0-dev'
+    version         = '2.4.0-dev'
     doi             = ''
 }