diff --git a/CHANGELOG.md b/CHANGELOG.md index 858dc01..de1f192 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -3,7 +3,9 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). -## v2.3.0-dev - [date] +## v2.4.0-dev - [date] + +## v2.3.0-dev ### `Added` - [#44](https://github.com/Ferlab-Ste-Justine/Post-processing-Pipeline/pull/44) Make interval file optional in GenotypeGVCFs process diff --git a/README.md b/README.md index cb4265f..e337d40 100644 --- a/README.md +++ b/README.md @@ -39,7 +39,7 @@ This schema was done using [inkscape](https://inkscape.org/) with the good prati Here is an example nextflow command to run the pipeline: ```bash -nextflow run -c cluster.config Ferlab-Ste-Justine/Post-processing-Pipeline -r "v2.3.0" \ +nextflow run -c cluster.config Ferlab-Ste-Justine/Post-processing-Pipeline -r "v2.4.0" \ -params-file params.json \ --input samplesheet.csv \ --outdir results/dir \ diff --git a/conf/modules.config b/conf/modules.config index 9239379..589ccc0 100644 --- a/conf/modules.config +++ b/conf/modules.config @@ -63,7 +63,7 @@ process { } withName: EXOMISER { - container = 'ferlabcrsj/exomiser:2.3.0' + container = 'ferlabcrsj/exomiser:2.4.0' publishDir = new_publish_dir([ enabled: true, pattern: 'results/*{vcf.gz,vcf.gz.tbi,tsv,json,html}' diff --git a/docs/usage.md b/docs/usage.md index ac081cb..c590585 100644 --- a/docs/usage.md +++ b/docs/usage.md @@ -54,7 +54,7 @@ These files must be correctly downloaded and specified through pipeline paramete The typical command for running the pipeline is as follows: ```bash -nextflow run -c cluster.config Ferlab-Ste-Justine/Post-processing-Pipeline -r "v2.3.0" \ +nextflow run -c cluster.config Ferlab-Ste-Justine/Post-processing-Pipeline -r "v2.4.0" \ -params-file params.json \ --input samplesheet.csv \ --outdir results/dir \ diff --git a/nextflow.config b/nextflow.config index 4b9ca3c..7504196 100644 --- a/nextflow.config +++ b/nextflow.config @@ -382,7 +382,7 @@ manifest { description = """Variant analysis for genome and exome GVCFs""" mainScript = 'main.nf' nextflowVersion = '!>=23.10.1' - version = '2.3.0-dev' + version = '2.4.0-dev' doi = '' }