v1.0.0

Ferrite v1.0.0

Diff since v0.3.14

See CHANGELOG.md for notable changes.

Merged pull requests:

• SubDofHandler/MixedGrid/PorousMedia example (#448) (@KnutAM)
• FaceCache and FaceIterator (#495) (@KnutAM)
• Describe Navier-Stokes Diffeq example mesh by gmsh api usage and translate via FerriteGmsh (#498) (@koehlerson)
• Extract boundary entities + getfaceedges helper (#606) (@AbdAlazezAhmed)
• Pyramids (#623) (@lijas)
• Improve dof distribution interface (#627) (@termi-official)
• Helper script for convergence rates for Poisson problems (#640) (@termi-official)
• [BREAKING] Embedded elements (#651) (@termi-official)
• Refactor to use grid and dofhandler interface internally (#655) (@termi-official)
• get_*_coordinates[!] - consistent naming (#664) (@KnutAM)
• Remove unused typeparameter from MixedDofHandler (#666) (@kimauth)
• Merge DofHandler and MixedDofHandler (#667) (@kimauth)
• Generalize topology construction (#670) (@termi-official)
• Replace deprecated functions in tests/examples (#671) (@KnutAM)
• Rework code for add!(::ConstraintHandler, ::Dirichlet) (#672) (@fredrikekre)
• Add ndofs_per_cell(::FieldHandler) (#673) (@fredrikekre)
• Speed up transform!(grid, f) (#675) (@KnutAM)
• Rework the AbstractCell interface (#679) (@fredrikekre)
• Remove old vertexdof_indices method (#685) (@fredrikekre)
• document vtk_grid(::String, ::DofHandler) (#687) (@KnutAM)
• Document all the reference shapes and their (current) numbering (#688) (@fredrikekre)
• Abstraction layer around vtk export (#692) (@KnutAM)
• CI timeout (#693) (@KnutAM)
• Implement (Scalar|Vector)Interpolation and VectorizedInterpolation{<:ScalarInterpolation} (#694) (@fredrikekre)
• Default to Lagrange{refdim,refshape,1}() for geometric mapping (#695) (@fredrikekre)
• Remove deprecated L2Projector methods (#697) (@fredrikekre)
• Deprecate function_*(::VectorValues, ::Int, ::VectorDofs) (#698) (@fredrikekre)
• Remove project_to_nodes option in L2 projection (#699) (@fredrikekre)
• Deprecate compute_vertex_values (#700) (@fredrikekre)
• Update VTK export to use CellValues for evalutation (#703) (@fredrikekre)
• Fix point eval interface (#705) (@termi-official)
• Improve boundschecks during assemble (#706) (@KnutAM)
• Deprecate start_assemble(f, K) (#707) (@KnutAM)
• Merge (Cell|Face)(Scalar|Vector)Values (#708) (@fredrikekre)
• Cross-elements coupling for DiscontinuousLagrange sparsity patterns. (#710) (@AbdAlazezAhmed)
• Use the new reference shapes for Interpolations and QuadratureRule (#711) (@fredrikekre)
• Remove the refdim parameter from AbstractCell. (#712) (@fredrikekre)
• replaced str with str_scalar/str_vector for CellValues warning (#713) (@JanM12)
• Hex27 VTK export (#714) (@termi-official)
• Embedded elements showcase: Gray-Scott model on a sphere (#715) (@termi-official)
• QuadratureRule: remove dim parameter and introduce FaceQuadratureRule (#716) (@fredrikekre)
• Allocate less in find_local_coordinate (#719) (@fredrikekre)
• Deprecate Ferrite.value and Ferrite.derivative (#720) (@fredrikekre)
• Fold Ferrite.value into methods of shape_value (#721) (@fredrikekre)
• More doc versions (#723) (@termi-official)
• Use the interpolation to figure out the return type in get_point_values (#724) (@fredrikekre)
• Make create_incidence_matrix work for AbstractGrid (#726) (@lijas)
• ConstraintHandler for discontinuous interpolations (#729) (@AbdAlazezAhmed)
• CellIterator broadcast safety doc warning (#730) (@AbdAlazezAhmed)
• introduced interpolation Lagrange{RefQuadrilateral, 3} (#731) (@fredrikekre)
• Error if the interpolation dof indices are wrong (#732) (@termi-official)
• Better defaults for high order dof distribution (#733) (@termi-official)
• Enable usage of vectorized geometric mapping also in non-embedded case (#734) (@fredrikekre)
• New DofHandler syntax for mixed grids / subdomains (#735) (@kimauth)
• pretty printing for VectorizedInterpolation (#736) (@kimauth)
• Structure the documentation according to the Diataxis framework. (#737) (@fredrikekre)
• Add stress computation to incompressible elasticity example (#739) (@gagankaushikmanyam)
• InterfaceValues for DG interface integration (#743) (@AbdAlazezAhmed)
• InterfaceCache & InterfaceIterator (#747) (@AbdAlazezAhmed)
• Fix doc links (#748) (@termi-official)
• Add tolerance for periodic face search. (#749) (@lijas)
• Make benchmarks work with master branch (#751) (@AbdAlazezAhmed)
• Topology vroom 1 (#753) (@termi-official)
• enhancement: Remove exported names (#754) (@3RB16)
• Update interpolation docs (#755) (@termi-official)
• Restructure tutorials into tutorials/howto/gallery (#756) (@fredrikekre)
• getcoordinates (#757) (@KnutAM)
• Fix neighborhood queries for topology (#758) (@termi-official)
• FaceSkeleton Vroom 1 (#759) (@AbdAlazezAhmed)
• Split values into geometric mapping and function values (#764) (@KnutAM)
• Add changelog entries for the upcoming release (#765) (@fredrikekre)
• Various changes to FaceCache/InterfaceCache/InterfaceIterator (#769) (@fredrikekre)
• Fix show of Face and Cell values (#771) (@KnutAM)
• Implement FaceQuadratureRule for RefPrism and RefPyramid (#779) (@AbdAlazezAhmed)
• enable dependabot for GitHub actions (#782) (@ranocha)
• Bump actions/checkout from 2 to 3 (#783) (@dependabot[bot])
• Bump codecov/codecov-action from 1 to 3 (#784) (@dependabot[bot])
• Change type of PointIterator in PointEvalHandler.jl (#785) (@suurj)
• use replace! instead of aliased map! (#786) (@KnutAM)
• DG heat equation tutorial (#787) (@AbdAlazezAhmed)
• Fix some Documenter link warnings (#791) (@fredrikekre)
• Improvements to assembler (#792) (@lijas)
• DocumenterCitations.jl baseline integration (#793) (@termi-official)
• Fix CellIterator for subdomains (#794) (@kimauth)
• Add more references and some urls/dois (#795) (@fredrikekre)
• Add Cenanovic citation (#796) (@termi-official)
• Linear elasticity example (#799) (@kimauth)
• fix vtk export of fields on mixed grids (#800) (@kimauth)
• More flexibility for internal types (#802) (@termi-official)
• remove allocations in reinit!(cv, xe) (#803) (@kimauth)
• pretty print interpolation in SubDofHandler (#804) (@kimauth)
• Bump actions/checkout from 3 to 4 (#805) (@dependabot[bot])
• define 1-arg getcelltype with a subdofhandler (#807) (@KnutAM)
• Fix CI times (#810) (@termi-official)
• Uniform point sampling for reference geometry and interpolation test fix (#818) (@termi-official)
• Batch evaluations (#819) (@termi-official)
• Test coverage for PointEval with nonlinear geometries (#820) (@termi-official)
• Add docstring to SubDofHandler (#825) (@KnutAM)
• Extensible InterpolationInfo (#830) (@termi-official)
• Introduce OrderedSets (#834) (@termi-official)
• add isequal and hash methods to check tuple in BoundaryIndex Sets without type piracy (#835) (@koehlerson)
• More first-order CR type elements (#838) (@termi-official)
• change to well posed NeoHooke (#846) (@koehlerson)
• Support saving no, or first order, derivatives in FEValues (#847) (@KnutAM)
• Some docfixes (#851) (@KnutAM)
• Rename files with values to match type name (#854) (@KnutAM)
• Update benchmarks (#855) (@AbdAlazezAhmed)
• Update CHANGELOG.md for DG PRs (#856) (@AbdAlazezAhmed)
• Simplify initialization of types for N, dNdx, and dNdξ (#858) (@fredrikekre)
• Make close of ConstraintHandler 50x faster (#860) (@KnutAM)
• Minor adjustments to FEValues devdocs (#861) (@KnutAM)
• Fix typos discovered by typos ci (#866) (@KnutAM)
• Add list of registered packages in the Ferrite ecosystem (#869) (@KnutAM)
• Fix bug in L2Projector (#870) (@lijas)
• Fix wrong confusing order of argument names in shape_x functions (#871) (@KnutAM)
• Bump actions/cache from 3 to 4 (#878) (@dependabot[bot])
• Bump codecov/codecov-action from 3 to 4 (#879) (@dependabot[bot])
• Add helper function bounding_box (#880) (@lijas)
• Use julia-actions/cache instead of actions/cache. (#881) (@fredrikekre)
• Make default constructor type stable (#882) (@KnutAM)
• doc: fix some doc build warnings (#887) (@fredrikekre)
• Implement a proper sparsity pattern (#888) (@fredrikekre)
• Update some missing Lagrange docs (#889) (@termi-official)
• [X-PR] p4est/p8est face transformation fix (#890) (@termi-official)
• Bump julia-actions/setup-julia from 1 to 2 (#895) (@dependabot[bot])
• p4est constraint handler integration (#900) (@termi-official)
• [X-PR] p4est edge operations and consistent corner operation (#902) (@koehlerson)
• Fix logo generation. (#904) (@KnutAM)
• Explicitly import all names (#905) (@fredrikekre)
• Update constraints.md (#907) (@koehlerson)
• Only test l2-projection hash for vtk export on linux (#915) (@KnutAM)
• Generalize CSC assembler (#916) (@termi-official)
• [X-PR] Update OrdinaryDiffEq.jl and fix Navier-Stokes solver (#917) (@termi-official)
• Delete unused method: n_facets_per_cell (#921) (@KnutAM)
• Deprecate onboundary, remove boundary_matrix property from Grid (#924) (@fredrikekre)
• Shell on solid-face test (#926) (@lijas)
• Add pre-commit action workflow (#928) (@fredrikekre)
• Remove workaround for facets in porous media example (#929) (@KnutAM)
• Remove facet workarounds for FerriteGmsh (#932) (@KnutAM)
• grid.jl docstrings and remove qualified Ferrite names (#933) (@KnutAM)
• Add make clean target to docs/Makefile (#934) (@fredrikekre)
• Document reference shape entity naming (#935) (@KnutAM)
• Fix pr link in vtk_grid error message (#937) (@KnutAM)
• Higher order gradients in CellValues (#938) (@lijas)
• Changelog for facets (#940) (@KnutAM)
• add dispatch for 2D edgeidx topology (#942) (@koehlerson)
• replace getdim with getrefdim/getspatialdim and getfielddim by n_components (#943) (@KnutAM)
• Simplify and speedup shape_gradient_and_value for embedded (#947) (@KnutAM)
• Fix and test write_cellset (#948) (@KnutAM)
• L2Projector on mixed grids (#949) (@KnutAM)
• remove JuaFEM mention from README (#951) (@KristofferC)
• Remove "simple finite element toolbox" from README file (#952) (@lijas)
• Rename default_interpolation -> geometric_interpolation (#953) (@KnutAM)
• Run ExplicitImport.jl's checks on CI (#954) (@fredrikekre)
• Changelog entry for geometric_interpolation (#955) (@KnutAM)
• Fix apply_analytical for subdomains (#956) (@DRollin)
• Function barrier in pointeval test (#957) (@KnutAM)
• Warn about SArray output from embedded FEValues (#959) (@KnutAM)
• use concrete types in MaterialState in topology example (#961) (@KristofferC)
• Rename reference and references (#962) (@termi-official)
• cache neighborhood information in topology example (#963) (@KristofferC)
• Expose some missing docstrings to devdocs (#964) (@termi-official)
• Fix crash with dof handler on true subdomains (#967) (@termi-official)
• Bump julia-actions/cache from 1 to 2 (#970) (@dependabot[bot])
• fix type error in grid generators and add some test functions for gri… (#973) (@Abdelrahman912)
• ExclusiveTopology with ArrayOfVectorViews backend (#974) (@KnutAM)
• Type-stable construction of AbstractValues (#979) (@KnutAM)
• Allow geometric_interpolation(::AbstractCell) (#981) (@KnutAM)
• Update to BlockArrays.jl v1 (#982) (@KnutAM)
• Remove self-qualified names (#985) (@fredrikekre)
• Fix nfacets for non-Grids (#987) (@termi-official)
• Update Documenter and other doc dependencies. (#990) (@fredrikekre)
• Extend quadrature type to include a storage type parameter (#991) (@termi-official)
• Allow more vector types for nodal evaluation of solution. (#992) (@termi-official)
• Require Julia 1.9 and remove ScalarWrapper (#994) (@fredrikekre)
• Run ExplicitImports check on extension modules (#995) (@fredrikekre)
• Change all deprecations to hard errors. (#996) (@fredrikekre)
• Replace shape_value etc for interpolations with reference_shape_value (#997) (@fredrikekre)
• Only facetskeleton in ExclusiveTopology (#998) (@KnutAM)
• Flip the sign in the definition of jump for interface values (#999) (@KnutAM)
• Set version to 1.0.0. (#1000) (@fredrikekre)
• Fix deprecation warning of Ferrite.(vertices|faces|edges) (#1003) (@fredrikekre)
• Add init_sparsity_pattern docstring to docs (#1005) (@KnutAM)
• Fix Quadrature rule docs and syms (#1007) (@termi-official)
• Fix arg ordering in add docstring (#1008) (@KnutAM)
• Throw when asking for dof indices of vectorized interpolations (#1010) (@KnutAM)
• remove ApplyStrategy enums (#1013) (@KnutAM)
• Rename VTKFile to VTKGridFile (#1014) (@KnutAM)
• Remove VTKFileCollection (#1015) (@KnutAM)
• Fix typed functions in Dirichlet (#1016) (@KnutAM)
• Widen accepted vector types in FEValues (#1017) (@termi-official)
• Add direct computation of mapping values (#1018) (@termi-official)
• Update degrees of freedom topic to reflect updates for 1.0 (#1020) (@KnutAM)
• speed up adding sparsity pattern entries with coupling (#1028) (@KristofferC)
• reduce chunk size of Hessian in Landau example to improve latency and performance (#1032) (@KristofferC)
• Add updated function names in devdocs (#1036) (@KnutAM)
• Fix notebook links in tutorials (#1038) (@KnutAM)
• Fix doc warnings and make docs build strict (#1039) (@KnutAM)
• Fix ns_vs_diffeq tutorial (#1045) (@KnutAM)
• Use https for codecov links (#1048) (@fredrikekre)
• Fix a typo in plasticity example (#1052) (@Niel-77)
• Fix wrong function to save pvd files in examples and docs (#1055) (@KnutAM)
• Clean up doc remaints of old face definition (#1056) (@KnutAM)
• Fix a deprecation warning in hyperelasticity tutorial (#1057) (@fredrikekre)
• Extend COOAssembler to also handle vector assembly (#1058) (@fredrikekre)
• Deprecate assemble! with local vector before local matrix (#1059) (@fredrikekre)
• User Changelog.jl for changelog generation (#1061) (@fredrikekre)
• Update doc build dependencies. (#1062) (@fredrikekre)
• Replace sparse with spzeros! in grid coloring (#1064) (@fredrikekre)
• Clarify why the inverse Metis permutation is used, closes #1065 (#1066) (@fredrikekre)
• Modernize the threaded assembly howto (#1068) (@fredrikekre)
• Consistently return the vtk file in export methods (#1069) (@fredrikekre)
• Remove old example notebook, closes #91. (#1073) (@fredrikekre)
• Correcting weak form + spelling mistake (#1074) (@mipals)
• Miscellaneous fixes to documentation (#1075) (@fredrikekre)
• Update documentation dependencies. (#1076) (@fredrikekre)
• Update changelog date for 1.0.0 (#1077) (@fredrikekre)
• Remove explicit documention of fields in CellCache (#1079) (@KnutAM)
• Add changelog for COOAssembler (#1080) (@KnutAM)
• Deprecate celldofs!(::Vector, ::(Cell|Facet)Cache) (#1082) (@fredrikekre)
• Add [compat] for ForwardDiff and StaticArrays (#1085) (@fredrikekre)

Closed issues:

• Make Yeoh large deformation notebook work again (#91)
• Export of super parametric elements (#167)
• Support arbitrary precision (#195)
• CellIterator not broadcast safe (#267)
• Maybe remove the fallback vtk_point_data (#278)
• L2Projection does not work accurately for mixed grids (#330)
• No examples with MixedDofHandler (#355)
• project_to_nodes in L2Projector projects to vertices (#380)
• Grid inconsistencies (#394)
• Remove ScalarWrappers and use const fields instead (#488)
• Requesting help with the error "det(J) is not positive" when using custom Delaunay grids (#515)
• Threaded Assembly Performance Degradation (#526)
• Support for Wedge&Pyramid elements (#580)
• Extract boundary entities (#595)
• Rename Ferrite.value and Ferrite.derivative (#609)
• L2Projector for mixed grids (#610)
• find_field and field_offset broken for MixedDofHandler (#613)
• Field dim is not necessarily spatial dim (#616)
• Topology construction is slow (#617)
• Fix embedded elements (#619)
• Introduce citation system to docs (#620)
• Merging DofHandler and MixedDofHandler (#624)
• Use OrderedSet for cellsets (#631)
• Verify interpolation <-> cell compatibility (#638)
• Topology broken for wedges (#641)
• dof management dev-docs (#661)
• Interpolation parameterization (#676)
• Change parameterization of (Abstract)Cell (#677)
• (Face|Cell)(Scalar|Vector)Values -> (Face|Cell)Values (#682)
• Workspace/additional data for interpolations in CellValues (#683)
• Topology construction for 1D elements is broken (#684)
• Update benchmarks for next release (#722)
• ExclusiveTopology topology.cell_neighbor is inclusive. (#728)
• Changing the meaning of Face in 1d/2d problems? (#740)
• Naming convention for getters (#741)
• Links in "Documentation of examples"-page do not work (#744)
• Refactoring of examples into tutorials, how-to guides, and code gallery. (#745)
• Remove exported names (#746)
• Showing FaceValues in the REPL is broken (#752)
• Update threading example (#760)
• Bug in PointValues (#763)
• Poor performance of converting Gmsh grid to Ferrite grid (#770)
• Implement FaceQuadratureRule for RefPrism and RefPyramid (#772)
• Go to definition problems (#773)
• A Loop over a CellIterator returns an Object of type CellCache (#775)
• Solutions of the assembled systems are misaligned/corrupted (#777)
• Ferrite.jl User & Developer Conference 2023 (#781)
• Too tight tolerance for pyramid interpolation tests? (#811)
• SimpleCellValues tutorial (#824)
• Docstrings for addedgeset! and addvertexset! missing (#833)
• AbstractFunctionValues (#837)
• Hyperelasticity example is not polyconvex (#844)
• Simplify deduction of eltype in FunctionValues constructor (#857)
• How to avoid trivial solutions? (#885)
• Explicitly import all names (#886)
• Coupling shells to solid faces (#899)
• Adopt proper names for entities with different dimensions and codimensions (#901)
• Some of links in documentation are dead (#908)
• Release v0.4 or wait to finish 1.0? (#909)
• Don't promise to not change fields in Grid (#918)
• Changelog for face -> facet changes (#919)
• Document return values of embedded as experimental / may change (#922)
• Document boundary entities (#923)
• Use Changelog.jl for CHANGELOG and include it as part of the HTML documentation (#925)
• getdim consistency (#936)
• fix topology getneighborhood call in 2D (#941)
• Docs naming for Reference vs References (#945)
• default_interpolation -> geometric_interpolation ? (#950)
• FacetValue does not seem to be type stable (#960)
• CellIterator causes a OutOfMemoryError (#966)
• Ferrite.jl User & Developer Conference 2024 (#969)
• docstring of geometric_interpolation is wrong (#978)
• Update to BlockArrays 1.0 (#980)
• Error after importing vtu file to paraview (#986)
• ExclusiveTopology skeletons (#988)
• Quadrature rule storage type parameter (#989)
• Use separate functions for creating quadrature rule instead of the QuadratureRule constructor (#1002)
• Dirichlet does not work with concretely typed functions (#1006)
• Fix doc warnings and make docs build strict (#1021)
• Question for dofs generation in DofHandler (#1042)
• The incompressible elasticity example does not work (#1047)
• Remove dofhandler from CellCache (#1049)
• Possible bug in FerriteMetis (#1065)