clusterconfig.yaml

__default__:
    nCPU: 1
    mem: 8000
    name      : "{rule}"
    output    : "logs/{rule}.%J.o"
    error     : "logs/{rule}.%J.e"
    time: "03:30:00"



sra_download:
    mem : 2000
    nCPU: 10
    time : "01:00:00"
    output : "logs/{rule}.%J.o"
    error : "logs/{rule}.%J.e"



kneaddata_bowtie:
    nCPU: 4
    mem: 40000
    name      : "{rule}"
    output    : "logs/{rule}.%J.o"
    error     : "logs/{rule}.%J.e"
    time      : "04:30:00"



sort:
    mem : 6000
    nCPU : 20
    output : "logs/{rule}.%J.o"
    error : "logs/{rule}.%J.e"
    time: "01:00:00"

zip_file:
    nCPU: 1
    mem: 5000
    name      : "{rule}"
    output    : "logs/{rule}.%J.o"
    error     : "logs/{rule}.%J.e"
    time      : "09:30:00"



spades:
    nCPU: 30
    mem: 60000
    name      : "{rule}"
    output    : "logs/{rule}.%J.o"
    error     : "logs/{rule}.%J.e"
    time      : "11:00:00"

spades_coas:
    nCPU: 30
    mem: 200000
    name      : "{rule}"
    output    : "logs/{rule}.%J.o"
    error     : "logs/{rule}.%J.e"
    time      : "3-00:00:00"



metawrap_binning:
    mem : 15000
    nCPU: 10
    time : "6:00:00"
    output : "logs/{rule}.%J.o"
    error : "logs/{rule}.%J.e"

metawrap_binning_coas:
    mem : 20000
    nCPU: 10
    time : "10:00:00"
    output : "logs/{rule}.%J.o"
    error : "logs/{rule}.%J.e"



bin_refinement:
    mem : 100000
    nCPU: 5
    time : "5:00:00"
    output : "logs/{rule}.%J.o"
    error : "logs/{rule}.%J.e"

bin_refinement_coas:
    mem : 100000
    nCPU: 5
    time : "4-07:00:00"
    output : "logs/{rule}.%J.o"
    error : "logs/{rule}.%J.e"

checkm:
    mem: 130000
    nCPU: 10
    time : "20:00:00"
    output : "logs/{rule}.%J.o"
    error : "logs/{rule}.%J.e"

checkm_coas:
    mem : 130000
    nCPU: 30
    time : "20:00:00"
    output : "logs/{rule}.%J.o"
    error : "logs/{rule}.%J.e"



mashdist:
    mem : 1000
    nCPU: 1
    time : "00:30:00"
    output : "logs/{rule}.%J.o"
    error : "logs/{rule}.%J.e"

dnadiff:
    mem : 5000
    nCPU: 2
    time : "02:30:00"
    output : "logs/{rule}.%J.o"
    error : "logs/{rule}.%J.e"



prokka:
    mem : 2000
    nCPU : 2
    time : "02:00:00"
    output : "logs/{rule}.%J.o"
    error : "logs/{rule}.%J.e"

prokka_coas:
    mem : 100000
    nCPU : 2
    time : "00:40:00"
    output : "logs/{rule}.%J.o"
    error : "logs/{rule}.%J.e"

cmseq:
    mem : 4000
    nCPU : 2
    time : "02:00:00"
    output : "logs/{rule}.%J.o"
    error : "logs/{rule}.%J.e"

cmseq_coas:
    mem : 10000
    nCPU : 2
    time : "10:00:00"
    output : "logs/{rule}.%J.o"
    error : "logs/{rule}.%J.e"



dRep_95:
    mem : 10000
    nCPU : 30
    time : "5:00:00"
    output : "logs/{rule}.%J.o"
    error : "logs/{rule}.%J.e"

dRep_95_coas:
    mem : 10000
    nCPU : 30
    time : "5:00:00"
    output : "logs/{rule}.%J.o"
    error : "logs/{rule}.%J.e"

GTDB_TK:
    mem : 500000
    nCPU: 2
    time : "10:30:00"
    output : "logs/{rule}.%J.o"
    error : "logs/{rule}.%J.e"



mapreads_scaffold:
    nCPU: 10
    mem: 5000
    name      : "{rule}"
    output    : "logs/{rule}.%J.o"
    error     : "logs/{rule}.%J.e"
    time      : "03:00:00"

cat_MAGs:
    mem : 6000
    nCPU : 10
    time : "03:00:00"
    output : "logs/{rule}.%J.o"
    error : "logs/{rule}.%J.e"

cat_MAGs_coas:
    mem : 6000
    nCPU : 10
    time : "03:00:00"
    output : "logs/{rule}.%J.o"
    error : "logs/{rule}.%J.e"

readmap:
    mem : 5000
    nCPU: 10
    time : "02:30:00"
    output : "logs/{rule}.%J.o"
    error : "logs/{rule}.%J.e"

readmap_coassembly:
    mem : 5000
    nCPU: 10
    time : "04:50:00"
    output : "logs/{rule}.%J.o"
    error : "logs/{rule}.%J.e"