Implementation of Rxuv computation for escape #441
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| name: Tests for PROTEUS | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| types: | |
| - opened | |
| - reopened | |
| - synchronize | |
| - ready_for_review | |
| workflow_dispatch: | |
| jobs: | |
| test: | |
| if: github.event.pull_request.draft == false | |
| name: Run Coverage and Tests | |
| strategy: | |
| matrix: | |
| os: ['ubuntu-latest', 'macos-latest'] | |
| python-version: ['3.11', '3.13'] | |
| include: | |
| - os: ubuntu-latest | |
| INSTALL_DEPS: sudo apt-get install libnetcdff-dev netcdf-bin | |
| CC: gcc | |
| CXX: g++ | |
| FC: gfortran | |
| - os: macos-latest | |
| INSTALL_DEPS: brew install gfortran netcdf netcdf-fortran | |
| CC: gcc | |
| CXX: g++ | |
| FC: gfortran | |
| env: | |
| FWL_DATA: ${{ github.workspace }}/fwl_data | |
| RAD_DIR: ${{ github.workspace }}/SOCRATES | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| # https://stackoverflow.com/a/65356209 | |
| - name: Install system dependencies | |
| run: ${{ matrix.INSTALL_DEPS }} | |
| # MacOS only: create symbolic link for gfortran | |
| - name: Symlink gfortran | |
| if: runner.os == 'macOS' | |
| run: | | |
| sudo ln -s /opt/homebrew/bin/gfortran-13 /opt/homebrew/bin/gfortran | |
| sudo ln -s /opt/homebrew/Cellar/gcc/12.*/lib/gcc/12/*.dylib /opt/homebrew/lib/ | |
| which gfortran | |
| # Checkout PROTEUS | |
| - name: Checkout PROTEUS | |
| uses: actions/checkout@v4 | |
| # Checkout SOCRATES | |
| - name: Checkout SOCRATES radiative transfer model | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: 'nichollsh/SOCRATES' | |
| path: ${{ env.RAD_DIR }} | |
| # Try to restore SOCRATES from the cache | |
| - name: Restore SOCRATES from cache | |
| uses: actions/cache@v4 | |
| id: cache-socrates | |
| with: | |
| path: | | |
| ${{ env.RAD_DIR }}/bin | |
| ${{ env.RAD_DIR }}/sbin | |
| ${{ env.RAD_DIR }}/set_rad_env | |
| key: socrates-${{ hashFiles('SOCRATES/version') }}-${{ runner.os }} | |
| # Build SOCRATES if we can't restore it from the cache | |
| - name: Build SOCRATES | |
| if: steps.cache-socrates.outputs.cache-hit != 'true' | |
| run: | | |
| export LD_LIBRARY_PATH="" | |
| echo $RAD_DIR | |
| cd $RAD_DIR | |
| ./configure | |
| ./build_code | |
| cd .. | |
| # Setup Python using the version defined in the matrix | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| # Try to restore the Python environment from the cache | |
| - name: Restore Python environment from cache | |
| uses: actions/cache@v4 | |
| id: cache-virtualenv | |
| with: | |
| path: ${{ env.pythonLocation }} | |
| key: ${{ env.pythonLocation }}-${{ hashFiles('pyproject.toml') }} | |
| # Setup Aragog | |
| - name: Checkout Aragog interior model | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: 'ExPlanetology/aragog' | |
| path: 'aragog' | |
| - name: Install Aragog | |
| run: python -m pip install -e aragog/. | |
| - name: Install Python dependencies | |
| run: python -m pip install -e .[develop] | |
| # Get lookup data for PROTEUS | |
| - name: Get FWL data from cache | |
| uses: actions/cache@v4 | |
| id: cache-fwl-data | |
| with: | |
| path: ${{ env.FWL_DATA }} | |
| key: fwl-data-2 | |
| # Get FWL data | |
| - name: Get additional FWL data | |
| if: steps.cache-fwl-data.cache-hit != 'true' | |
| run: | | |
| proteus get stellar | |
| proteus get spectral --name Frostflow --bands 48 | |
| # Run PROTEUS tests | |
| - name: Test with pytest | |
| run: coverage run -m pytest | |
| # Upload output run images if tests fail | |
| - name: Upload PNG plots as artifacts | |
| if: failure() | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: png-plots | |
| path: | | |
| output/physical/plot_atmosphere.png | |
| output/physical/plot_escape.png | |
| output/physical/plot_global_log.png | |
| output/physical/plot_observables.png | |
| output/physical/plot_stacked.png | |
| output/physical/plot_elements.png | |
| output/physical/plot_fluxes_atmosphere.png | |
| output/physical/plot_interior_cmesh.png | |
| output/physical/plot_sflux_cross.png | |
| output/physical/plot_emission.png | |
| output/physical/plot_interior.png | |
| output/physical/plot_sflux.png | |
| - name: Report coverage | |
| run: | | |
| coverage json | |
| export TOTAL=$(python -c "import json;print(json.load(open('coverage.json'))['totals']['percent_covered_display'])") | |
| echo "Total coverage: $TOTAL" | |
| echo "total=$TOTAL" >> $GITHUB_ENV | |
| echo "### Total coverage: ${TOTAL}%" >> $GITHUB_STEP_SUMMARY | |
| echo $'\n```' >> $GITHUB_STEP_SUMMARY | |
| coverage report >> $GITHUB_STEP_SUMMARY | |
| echo $'\n```' >> $GITHUB_STEP_SUMMARY | |
| - name: Make coverage badge | |
| if: ${{ github.ref == 'refs/heads/main' && matrix.python-version == '3.13' }} | |
| uses: schneegans/dynamic-badges-action@v1.7.0 | |
| with: | |
| auth: ${{ secrets.GIST_TOKEN }} | |
| gistID: b4ee7dab92e20644bcb3a5ad09f71165 | |
| filename: covbadge.svg | |
| label: Coverage | |
| message: ${{ env.total }}% | |
| minColorRange: 50 | |
| maxColorRange: 90 | |
| valColorRange: ${{ env.total }} |