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Mutation "chunks" #7

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Commits on Apr 15, 2024

  1. some basic design

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    molpopgen committed Apr 15, 2024
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  2. For a first pass, let's do chunks of 64 mutations

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  3. Renaming

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  4. some musings

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  5. more musings

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  6. baby steps to tests

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  7. more about what we actually need

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  8. more design notes

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  9. some infrastructure

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  10. on the wrong path, I think?

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  11. thoughts on what and OO version could look like

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  12. arrayref using std. yay

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  13. some cool tricks. some terrible design

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  14. some code re-use

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  15. use Self::CHUNK_SIZE

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  16. steps towards a working fn

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  17. the borrow checker stops us.

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  18. use indexes to get around the borrow checker

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  19. ugh, maybe struct approach is simpler at first

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  20. defeated by the borrow checker. More to come tomorrow...

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  21. some notes

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  22. strip to bare bones based on pencil + paper sketches

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  23. Default

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  24. some basic tets

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  25. add is_empty

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  26. copying one chunk into another

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  27. tests passsing

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  28. add to occupancy

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  29. comment

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  30. note for later

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  31. Note

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  32. basic position fetching

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  33. dedup

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  34. simplify

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  35. cleanup

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  36. FIXME fixed

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  37. on a path to ruin here...

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  38. getting somewhere

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  39. test more complex cases

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  40. more detailed tests

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  41. failing test of single crossover

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  42. notes on what we need.

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  43. need mutability here, I think?

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  44. start to work on checking if we need new chunk

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  45. another todo

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  46. do one todo

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  47. fiddle with the error checking a bit

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  48. and we are gettign the wrong answers from the previous loop...

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  49. and we are gettign the wrong answers from the previous loop...

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  50. split tests

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  51. some more print help

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  52. start to abstract out inner ops

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  53. fix closure

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  54. hit the borrow checker

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  55. solve borrow checker

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  56. baby steps

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  57. outline next steps

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  58. fmt

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  59. lint

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  60. update other internal stuff that will need to abstract later

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  61. better todo msg

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  62. better better msg

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  63. fast path to passing tests

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  64. fill final output

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  65. rename

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  66. add failing test

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  67. cleanz

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  68. cleanz

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  69. better test setup, now failing as expected

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  70. start over, using Python prototype as guidance

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  71. We need the chunk length

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  72. start crossover fn

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