BIBLIOGRAPHIC REFERENCE:
TITLE: IL-13 mRNA tissue content identifies two subsets of adult ulcerative colitis patients with different clinical and mucosa-associated microbiota profiles
Authors: Alessia Butera, Monica Di Paola, Francesco Vitali, Daniela De Nitto, Francesco Covotta, Francesco Borrini, Roberta Pica, Carlotta De Filippo, Duccio Cavalieri, Alessandro Giuliani, Annamaria Pronio, Monica Boirivant
DOI: https://doi.org/10.1093/ecco-jcc/jjz154
DESCRIPTION
This repository was created with the aim of storing and making public the scripts and command that were used for microbiota analysis in the manuscript "IL-13 mRNA tissue content identifies two subsets of adult ulcerative colitis patients with different clinical and mucosa-associated microbiota profiles".
- Command used for raw reads pre-treatment and OTUs picking can be found here in the file from_seqs_to_OTU.sh
- Command used in R for data analysis can be found in the file Colitis_analysis.R